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  1. Article

    Open Access

    Dynamic radiomics based on contrast-enhanced MRI for predicting microvascular invasion in hepatocellular carcinoma

    To exploit the improved prediction performance based on dynamic contrast-enhanced (DCE) MRI by using dynamic radiomics for microvascular invasion (MVI) in hepatocellular carcinoma (HCC).

    Rui Zhang, Yao Wang, Zhi Li, Yushu Shi, Dan** Yu, Qiang Huang in BMC Medical Imaging (2024)

  2. Article

    Open Access

    Development and testing of a polygenic risk score for breast cancer aggressiveness

    Aggressive breast cancers portend a poor prognosis, but current polygenic risk scores (PRSs) for breast cancer do not reliably predict aggressive cancers. Aggressiveness can be effectively recapitulated using ...

    Yiwey Shieh, Jacquelyn Roger, Christina Yau, Denise M. Wolf in npj Precision Oncology (2023)

  3. No Access

    Article

    Development and external validation of a multiparametric MRI-based radiomics model for preoperative prediction of microsatellite instability status in rectal cancer: a retrospective multicenter study

    To establish and validate a radiomics model based on multiparametric magnetic resonance imaging (MRI), and to predict microsatellite instability (MSI) status in rectal cancer patients.

    Zhi Li, **g Zhang, Qi Zhong, Zhan Feng, Yushu Shi, Ligong Xu in European Radiology (2023)

  4. Article

    Open Access

    Transfer efficiency and impact on disease phenotype of differing methods of gut microbiota transfer

    To test causal relationships between complex gut microbiota (GM) and host outcomes, researchers frequently transfer GM between donor and recipient mice via embryo transfer (ET) rederivation, cross-fostering (C...

    Chunye Zhang, Yushu Shi, Matthew Burch, Benjamin Olthoff in Scientific Reports (2022)

  5. Article

    Open Access

    Automatic Measurement of Silicon Lattice Spacings in High-Resolution Transmission Electron Microscopy Images Through 2D Discrete Fourier Transform and Inverse Discrete Fourier Transform

    Line width (i.e., critical dimension, CD) is a crucial parameter in integrated circuits. To accurately control the CD in manufacturing, a reasonable CD measurement algorithm is required. We develop an automati...

    Fang Wang, Yushu Shi, Shu Zhang, **xi Yu, Wei Li in Nanomanufacturing and Metrology (2022)

  6. Article

    Open Access

    Performance determinants of unsupervised clustering methods for microbiome data

    In microbiome data analysis, unsupervised clustering is often used to identify naturally occurring clusters, which can then be assessed for associations with characteristics of interest. In this work, we syste...

    Yushu Shi, Liangliang Zhang, Christine B. Peterson, Kim-Anh Do in Microbiome (2022)

  7. Article

    Open Access

    Nodal immune flare mimics nodal disease progression following neoadjuvant immune checkpoint inhibitors in non-small cell lung cancer

    Radiographic imaging is the standard approach for evaluating the disease involvement of lymph nodes in patients with operable NSCLC although the impact of neoadjuvant immune checkpoint inhibitors (ICIs) on lym...

    Tina Cascone, Annikka Weissferdt, Myrna C. B. Godoy in Nature Communications (2021)

  8. Article

    Open Access

    ProgPerm: Progressive permutation for a dynamic representation of the robustness of microbiome discoveries

    Identification of features is a critical task in microbiome studies that is complicated by the fact that microbial data are high dimensional and heterogeneous. Masked by the complexity of the data, the problem...

    Liangliang Zhang, Yushu Shi, Kim-Anh Do, Christine B. Peterson in BMC Bioinformatics (2021)

  9. No Access

    Article

    A dependent Dirichlet process model for survival data with competing risks

    In this paper, we first propose a dependent Dirichlet process (DDP) model using a mixture of Weibull models with each mixture component resembling a Cox model for survival data. We then build a Dirichlet proce...

    Yushu Shi, Purushottam Laud, Joan Neuner in Lifetime Data Analysis (2021)

  10. No Access

    Article

    Precise measurement of particle size in colloid system based on the development of multiple-angle dynamic light scattering apparatus

    Dynamic light scattering (DLS) is a widely used, non-invasive and in-situ method for particle size measurement. However, the precision of the measurement results is still under discussion. Theoretically, the a...

    Lu Huang, Miao Sun, Sitian Gao, Yushu Shi, Wei Li in Applied Physics B (2020)

  11. No Access

    Article

    Aberrant interhemispheric functional connectivity in first-episode, drug-naïve major depressive disorder

    Many studies have indicated that depression is associated with impairment of the topological organization of the brain functional network, which may lead to disruption of mood and cognition in depressive patie...

    Hong Yang, Chengwei Wang, Gongjun Ji, Zhan Feng in Brain Imaging and Behavior (2019)

  12. No Access

    Article

    Fractures in a nationwide population-based cohort of users of breast cancer hormonal therapy

    Although users of aromatase inhibitors have higher total fracture risk in some randomized trials, little is known about their risk outside of clinical trials or in older higher-risk cohorts.

    Joan M. Neuner, Yushu Shi, Amanda L. Kong in Journal of Cancer Survivorship (2018)

  13. No Access

    Article

    Active coherent control of nanoscale light confinement: Modulation of plasmonic modes and position of hotspots for surface-enhanced Raman scattering detection

    Multistep plasmonic nanostructures can induce the deep modulation of electromagnetic-field interactions on the nanoscale for positioning hotspots, and this generation of enhanced fields is important in many op...

    Zhendong Zhu, Qixia Wang, Fa Zeng, Oubo You, Sitian Gao, Benfeng Bai in Nano Research (2017)

  14. No Access

    Article

    Photoelectrochemical determination of Hg(II) via dual signal amplification involving SPR enhancement and a folding-based DNA probe

    The authors describe a highly sensitive and selective photoelectrochemical (PEC) assay for mercury(II) ions. It is based on a dual signal amplification strategy. The first enhancement results from the surface ...

    Yushu Shi, Guoqing Zhang, Jiaojiao Li, Yong Zhang, Yanbao Yu, Qin Wei in Microchimica Acta (2017)