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  1. Article

    Open Access

    Comprehensive evaluation of vaginal intraepithelial neoplasia development after hysterectomy: insights into diagnosis and treatment strategies

    Vaginal intraepithelial neoplasia (VaIN), a precancerous lesion associated with human papillomavirus (HPV), impacts women’s health and quality of life. However, the natural progression of VaIN after hysterecto...

    Jiahui Wei, Yumei Wu in Archives of Gynecology and Obstetrics (2024)

  2. No Access

    Article

    Association between body mass index and lymph node metastasis among women with cervical cancer: a systematic review and network meta-analysis

    Lymph node status is a determinant of survival in patients with early-stage cervical cancer. However, the relationship between obesity and lymph node status remains unclear. Therefore, this systematic review a...

    Tiantian Shen, Si Sun, Wenhan Li, **aoman Wang in Archives of Gynecology and Obstetrics (2024)

  3. No Access

    Article

    Variation in TaSPL6-D confers salinity tolerance in bread wheat by activating TaHKT1;5-D while preserving yield-related traits

    Na+ exclusion from above-ground tissues via the Na+-selective transporter HKT1;5 is a major salt-tolerance mechanism in crops. Using the expression genome-wide association study and yeast-one-hybrid screening, we...

    Meng Wang, Jie Cheng, Jianhui Wu, Jiefei Chen, Dan Liu, Chenyang Wang in Nature Genetics (2024)

  4. Article

    Open Access

    Multimodal epigenetic sequencing analysis (MESA) of cell-free DNA for non-invasive colorectal cancer detection

    Detecting human cancers through cell-free DNA (cfDNA) in blood is a sensitive and non-invasive option. However, capturing multiple forms of epigenetic information remains a technical and financial challenge.

    Yumei Li, Jianfeng Xu, Chaorong Chen, Zhenhai Lu, Desen Wan, Diange Li in Genome Medicine (2024)

  5. Article

    Open Access

    Single-cell multiomics of the human retina reveals hierarchical transcription factor collaboration in mediating cell type-specific effects of genetic variants on gene regulation

    Systematic characterization of how  genetic variation modulates gene regulation in a cell type-specific context is essential for understanding complex traits. To address this question, we profile gene expressi...

    Jun Wang, Xuesen Cheng, Qingnan Liang, Leah A. Owen, Jiaxiong Lu in Genome Biology (2023)

  6. Article

    Open Access

    Genetic polymorphisms of GGT1 gene (rs8135987, rs5751901 and rs2017869) are associated with neoadjuvant chemotherapy efficacy and toxicities in breast cancer patients

    Our previous study illustrated the predictive value of serum gamma-glutamyl transpeptidase (GGT) for neoadjuvant chemotherapy (NAC) sensitivity in breast cancer patients. In this study we aim to determine whet...

    Lu Sun, Zi** Wu, Yan** Lin, Shuguang Xu, Yumei Ye, Wen** Yin in BMC Medical Genomics (2023)

  7. No Access

    Article

    Definition of a Novel Immunogenic Cell Death-Relevant Gene Signature Associated with Immune Landscape in Gastric Cancer

    Immunogenic cell death (ICD) induces anti-tumor immunity and aids in dismantling the immunosuppressive immune microenvironment (TME), which belongs to a type of regulated cell death. The differentiation of gas...

    Yajun Meng, Ze **, Mengmeng Wang, Di Chen, Mengpei Zhu in Biochemical Genetics (2023)

  8. Article

    Open Access

    Identification of two novel SALL1 mutations in chinese families with townes-brocks syndrome and literature review

    Townes-Brocks syndrome is a rare autosomal dominant genetic syndrome caused by mutations in SALL1. The clinical features of Townes-Brocks syndrome are highly heterogonous. Identification of new SALL1 mutations an...

    Zhendong Wang, Zhenfu Sun, Yujie Diao, Zhouyang Wang in Orphanet Journal of Rare Diseases (2023)

  9. Article

    Open Access

    MicroRNA-361-5p acts as a biomarker for carotid artery stenosis and promotes vascular smooth muscle cell proliferation and migration

    Vascular smooth muscle cells (VSMCs) dysfunction participates in carotid artery stenosis (CAS). The study aimed to examine the expression pattern of miR-361-5p in CAS patients, and explore its role in VSMCs pr...

    Fei Wang, Yumei An, Huihui Hao in BMC Medical Genomics (2023)

  10. No Access

    Article

    A Comprehensive Genome-Wide Analysis of lncRNA Expression Profile during Hepatic Carcinoma Cell Proliferation Promoted by Phospholipase Cγ2

    Phospholipase Cγ2 has the promotive effect on hepatic carcinoma development. Meanwhile, lncRNAs play a critical role in the pathology. Therefore, to make clear whether phospholipase Cγ2 could enhance HCC cell ...

    **aoguang Chen, Qiongxia Lv, Yumei Liu in Cytology and Genetics (2023)

  11. Article

    Open Access

    Systemic interindividual epigenetic variation in humans is associated with transposable elements and under strong genetic control

    Genetic variants can modulate phenotypic outcomes via epigenetic intermediates, for example at methylation quantitative trait loci (mQTL). We present the first large-scale assessment of mQTL at human genomic r...

    Chathura J. Gunasekara, Harry MacKay, C. Anthony Scott, Shaobo Li in Genome Biology (2023)

  12. Article

    Open Access

    PCA outperforms popular hidden variable inference methods for molecular QTL map**

    Estimating and accounting for hidden variables is widely practiced as an important step in molecular quantitative trait locus (molecular QTL, henceforth “QTL”) analysis for improving the power of QTL identific...

    Heather J. Zhou, Lei Li, Yumei Li, Wei Li, **gyi Jessica Li in Genome Biology (2022)

  13. Article

    Open Access

    An ultrapotent pan-β-coronavirus lineage B (β-CoV-B) neutralizing antibody locks the receptor-binding domain in closed conformation by targeting its conserved epitope

    New threats posed by the emerging circulating variants of SARS-CoV-2 highlight the need to find conserved neutralizing epitopes for therapeutic antibodies and efficient vaccine design. Here, we identified a re...

    Zezhong Liu, Wei Xu, Zhenguo Chen, Wangjun Fu, Wuqiang Zhan, Yidan Gao in Protein & Cell (2022)

  14. Article

    Correction: SIK2 maintains breast cancer stemness by phosphorylating LRP6 and activating Wnt/β-catenin signaling

    Zhuoxian Rong, Lu Zhang, Zhi Li, Zhi **ao, Yumei Duan, **nxin Ren, Yuyuan Zi in Oncogene (2022)

  15. No Access

    Article

    Berberine attenuates hyperalgesia in mice with adenomyosis

    Adenomyosis is a common gynecological disease, but its pathogenesis and treatment options are not yet completely clear. This study aimed to investigate the analgesic effect of berberine on tamoxifen-induced ne...

    Bo Zhu, Yumei Chen, Min Guo, Chenhui zhang in Archives of Gynecology and Obstetrics (2022)

  16. Article

    Open Access

    Bi-order multimodal integration of single-cell data

    Integration of single-cell multiomics profiles generated by different single-cell technologies from the same biological sample is still challenging. Previous approaches based on shared features have only provi...

    **zhuang Dou, Shaoheng Liang, Vakul Mohanty, Qi Miao, Yuefan Huang in Genome Biology (2022)

  17. No Access

    Article

    OLFM4 deficiency delays the progression of colitis to colorectal cancer by abrogating PMN-MDSCs recruitment

    Chronic inflammatory bowel disease (IBD) is strongly associated with the development of colitis-associated tumorigenesis (CAT). Despite recent advances in the understanding of polymorphonuclear myeloid-derived...

    Ziyang Chen, **aogang Zhang, Zhe **ng, Shuaijun Lv, Linxuan Huang, **g** Liu in Oncogene (2022)

  18. No Access

    Article

    Bioinformatic analysis of key pathways and genes shared between endometriosis and ovarian cancer

    The purpose of the study is to identify potential key genes and pathways, using bioinformatics, underlying the potentially common molecular mechanisms between endometriosis (EMS) and ovarian cancer (OC).

    Leyi Ni, Yumei Chen, Jie Yang, Cong Chen in Archives of Gynecology and Obstetrics (2022)

  19. No Access

    Article

    DVPred: a disease-specific prediction tool for variant pathogenicity classification for hearing loss

    Numerous computational prediction tools have been introduced to estimate the functional impact of variants in the human genome based on evolutionary constraints and biochemical metrics. However, their implemen...

    Fengxiao Bu, Mingjun Zhong, Qinyi Chen, Yumei Wang, **a Zhao, Qian Zhang in Human Genetics (2022)

  20. No Access

    Article

    SIK2 maintains breast cancer stemness by phosphorylating LRP6 and activating Wnt/β-catenin signaling

    Breast cancer stem cells (BCSCs) are the main drivers of recurrence and metastasis. However, commonly used drugs rarely target BCSCs. Via screenings, we found that Salt-inducible kinase 2 (SIK2) participated i...

    Zhuoxian Rong, Lu Zhang, Zhi Li, Zhi **ao, Yumei Duan, **nxin Ren, Yuyuan Zi in Oncogene (2022)

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