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  1. Article

    Open Access

    Simultaneous targeted and discovery-driven clinical proteoty** using hybrid-PRM/DIA

    Clinical samples are irreplaceable, and their transformation into searchable and reusable digital biobanks is critical for conducting statistically empowered retrospective and integrative research studies. Cur...

    Sandra Goetze, Audrey van Drogen, Jonas B. Albinus, Kyle L. Fort in Clinical Proteomics (2024)

  2. Article

    Open Access

    Ultra-fast label-free quantification and comprehensive proteome coverage with narrow-window data-independent acquisition

    Mass spectrometry (MS)-based proteomics aims to characterize comprehensive proteomes in a fast and reproducible manner. Here we present the narrow-window data-independent acquisition (nDIA) strategy consisting...

    Ulises H. Guzman, Ana Martinez-Val, Zilu Ye, Eugen Damoc in Nature Biotechnology (2024)

  3. Article

    Open Access

    Hybrid-DIA: intelligent data acquisition integrates targeted and discovery proteomics to analyze phospho-signaling in single spheroids

    Achieving sufficient coverage of regulatory phosphorylation sites by mass spectrometry (MS)-based phosphoproteomics for signaling pathway reconstitution is challenging, especially when analyzing tiny sample am...

    Ana Martínez-Val, Kyle Fort, Claire Koenig, Leander Van der Hoeven in Nature Communications (2023)

  4. Article

    Open Access

    Dietary resistant starch ameliorating lipopolysaccharide-induced inflammation in meat ducks associated with the alteration in gut microbiome and glucagon-like peptide 1 signaling

    Consumption of resistant starch (RS) has been associated with various intestinal and systemic health benefits, but knowledge of its effects on intestinal health and inflammatory response in stressed birds is l...

    Simeng Qin, Weiqiang Bai, Todd J. Applegate in Journal of Animal Science and Biotechnology (2022)

  5. No Access

    Article

    Precise regulation of acid pretreatment for red mud SCR catalyst: Targeting on optimizing the acidity and reducibility

    Red mud (RM), as an alkaline waste, was recently proved to be a promising substitute for the SCR catalyst. Dealkalization could improve the acidity and reducibility of red mud, which were critical for SCR reac...

    **ang Zhang, Yue Xuan, Bin Wang, Chuan Gao in Frontiers of Environmental Science & Engin… (2021)

  6. Article

    Open Access

    Effect of organic acids on growth performance, intestinal morphology, and immunity of broiler chickens with and without coccidial challenge

    A total of 360-day-old broiler chicks were allocated into six groups in 2 (Coccidial challenge or not) × 3 (dietary treatments) factorial design. Three dietary treatments including: basic diet, basic diet plus...

    Ahsan Mustafa, Shi** Bai, Qiufeng Zeng, Xuemei Ding, Jian** Wang in AMB Express (2021)

  7. No Access

    Article

    Arctic sea ice thickness variations from CryoSat-2 satellite altimetry data

    Arctic sea ice plays an important role in Earth’s climate and environmental system. Sea ice thickness is one of the most important sea ice parameters. Accurately obtaining the sea ice thickness and its changes...

    Feng **ao, Shengkai Zhang, Jiaxing Li, Tong Geng, Yue Xuan in Science China Earth Sciences (2021)

  8. No Access

    Article

    Effects of Dietary Iron Concentration on Manganese Utilization in Broilers Fed with Manganese-Lysine Chelate-Supplemented Diet

    Dietary iron (Fe) influences manganese (Mn) utilization in chickens fed with inorganic Mn-supplemented diet. This study aimed to determine if dietary Fe levels affect Mn utilization in broilers fed with organi...

    Shi** Bai, Jialong Peng, Keying Zhang, Xuemei Ding in Biological Trace Element Research (2020)

  9. Article

    Open Access

    Standardization and harmonization of distributed multi-center proteotype analysis supporting precision medicine studies

    Cancer has no borders: Generation and analysis of molecular data across multiple centers worldwide is necessary to gain statistically significant clinical insights for the benefit of patients. Here we conceive...

    Yue Xuan, Nicholas W. Bateman, Sebastien Gallien, Sandra Goetze in Nature Communications (2020)

  10. No Access

    Article

    Effects of Dietary Iron on Manganese Utilization in Broilers Fed with Corn-Soybean Meal Diet

    To investigate the effects of dietary iron (Fe) levels on manganese (Mn) utilization, 900 8-day-old broilers were randomly assigned to 1 of 6 treatments in a 3 (Fe level) × 2 (Mn level) factorial arrangement a...

    Shi** Bai, Jialong Peng, Keying Zhang, Xuemei Ding in Biological Trace Element Research (2020)

  11. No Access

    Article

    High Dietary Iron Differentially Influences the Iron Distribution in the Livers and the Spleens of Laying Hens After Salmonella Typhimurium Infection

    Salmonella and the host battle for iron (Fe), due to its importance for fundamental cellular processes. To investigate Fe redistribution of Salmonella-infected hens and the effects of high dietary Fe on it, Salmo...

    Shi** Bai, Keying Zhang, Xuemei Ding, Jian** Wang in Biological Trace Element Research (2018)

  12. Article

    Open Access

    Genome-wide DNA methylation analysis in jejunum of Sus scrofa with intrauterine growth restriction

    Intrauterine growth restriction (IUGR) may elicit a series of postnatal body developmental and metabolic diseases due to their impaired growth and development in the mammalian embryo/fetus during pregnancy. In...

    Yue Hu, Liang Hu, Desheng Gong, Hanlin Lu, Yue Xuan in Molecular Genetics and Genomics (2018)

  13. No Access

    Article

    Effect of High Dietary Manganese on the Immune Responses of Broilers Following Oral Salmonella typhimurium Inoculation

    Manganese (Mn) is an essential nutrient for both host and pathogen. Recent studies have demonstrated the nutritional immunity of Mn against Salmonella infection in mammals. To investigate the effect of high dieta...

    Shuqin Pan, Keying Zhang, Xuemei Ding, Jian** Wang in Biological Trace Element Research (2018)

  14. Article

    Open Access

    Effects of oil quality and antioxidant supplementation on sow performance, milk composition and oxidative status in serum and placenta

    The aim of this study was to determine the effects of oil quality and antioxidant (AOX) supplementation on sow performance, milk composition and oxidative status.

    Guoqi Su, Junmei Zhao, Guangbo Luo, Yue Xuan in Lipids in Health and Disease (2017)

  15. Article

    Open Access

    Effect of dietary canthaxanthin and 25-hydroxycholecalciferol supplementation on the performance of duck breeders under two different vitamin regimens

    Dietary canthaxanthin (CX), 25-hydroxycholecalciferol (25-OH-D 3 ) and vitamins have been widely reported to be involved in productive and reprodu...

    Zhouzheng Ren, Shizhen Jiang, Qiufeng Zeng in Journal of Animal Science and Biotechnology (2016)

  16. No Access

    Article

    Multiplexed peptide analysis using data-independent acquisition and Skyline

    Skyline is a targeted proteomics environment that can be used in the detection and quantitation of peptides. In this protocol the MS/MS peptide data is generated by data-independent acquisition on a Q-Exactive...

    Jarrett D Egertson, Brendan MacLean, Richard Johnson, Yue Xuan in Nature Protocols (2015)

  17. Article

    Open Access

    Effects of a multi-enzyme complex on growth performance, nutrient utilization and bone mineralization of meat duck

    Previous studies with broiler have shown dietary supplementation with multi-enzyme complex containing non-starch polysaccharides (NSP) degrading enzymes and phytase is efficient in releasing phosphorus (P), ca...

    Qiufeng Zeng, Xueqin Huang, Yuheng Luo in Journal of Animal Science and Biotechnology (2015)

  18. No Access

    Chapter

    The Role of Home-Literacy Environment in Learning to Read Chinese

    The purpose of this study is to examine the relation between home-literacy environment and Chinese children’s reading development. Information about four parameters of home-literacy environment (literacy resou...

    Shu Hua, Li Wenling, Richard Anderson, Ku Yu-Min in Chinese Children’s Reading Acquisition (2002)