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Microarray Technology for Use in Molecular Epidemiology

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  1. Article

    Open Access

    Analysis of 16S rRNA gene sequences and circulating cell-free DNA from plasma of chronic fatigue syndrome and non-fatigued subjects

    The association of an infectious agent with chronic fatigue syndrome (CFS) has been difficult and is further complicated by the lack of a known lesion or diseased tissue. Cell-free plasma DNA could serve as a ...

    Suzanne D Vernon, Sanjay K Shukla, Jennifer Conradt, Elizabeth R Unger in BMC Microbiology (2002)

  2. Article

    Open Access

    Gene expression profile of cervical tissue compared to exfoliated cells: Impact on biomarker discovery

    Exfoliated cervical cells are used in cytology-based cancer screening and may also be a source for molecular biomarkers indicative of neoplastic changes in the underlying tissue. However, because of keratiniza...

    Martin Steinau, Daisy R Lee, Mangalathu S Rajeevan, Suzanne D Vernon in BMC Genomics (2005)

  3. Article

    Open Access

    Laboratory methods to improve SELDI peak detection and quantitation

    Protein profiling with surface-enhanced laser desorption-ionisation time-of-flight mass spectrometry (SELDI-TOF MS) is a promising approach for biomarker discovery. Some candidate biomarkers have been identifi...

    Dominique Rollin, Toni Whistler, Suzanne D Vernon in Proteome Science (2007)

  4. Article

    Open Access

    A method for improving SELDI-TOF mass spectrometry data quality

    Surface-enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI-TOF MS) is a powerful tool for rapidly generating high-throughput protein profiles from a large number of samples. However, ...

    Toni Whistler, Dominique Rollin, Suzanne D Vernon in Proteome Science (2007)

  5. Article

    Open Access

    Integrated Weighted Gene Co-expression Network Analysis with an Application to Chronic Fatigue Syndrome

    Systems biologic approaches such as Weighted Gene Co-expression Network Analysis (WGCNA) can effectively integrate gene expression and trait data to identify pathways and candidate biomarkers. Here we show tha...

    Angela P Presson, Eric M Sobel, Jeanette C Papp, Charlyn J Suarez in BMC Systems Biology (2008)

  6. Article

    Open Access

    Cultivation of common bacterial species and strains from human skin, oral, and gut microbiota

    Genomics-driven discoveries of microbial species have provided extraordinary insights into the biodiversity of human microbiota. In addition, a significant portion of genetic variation between microbiota exist...

    Elizabeth Fleming, Victor Pabst, Zoe Scholar, Ruoyun **ong in BMC Microbiology (2021)