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  1. No Access

    Article

    Resolution in super-resolution microscopy — definition, trade-offs and perspectives

    Super-resolution microscopy (SRM) is gaining popularity in biosciences; however, claims about optical resolution are contested and often misleading. In this Viewpoint, experts share their views on resolution a...

    Kirti Prakash, David Baddeley, Christian Eggeling in Nature Reviews Molecular Cell Biology (2024)

  2. No Access

    Article

    Live-cell imaging powered by computation

    The proliferation of microscopy methods for live-cell imaging offers many new possibilities for users but can also be challenging to navigate. The prevailing challenge in live-cell fluorescence microscopy is c...

    Hari Shroff, Ilaria Testa, Florian Jug in Nature Reviews Molecular Cell Biology (2024)

  3. Article

    Open Access

    Chromosome organization shapes replisome dynamics in Caulobacter crescentus

    DNA replication in bacteria takes place on highly compacted chromosomes, where segregation, transcription, and repair must occur simultaneously. Within this dynamic environment, colocalization of sister replis...

    Chen Zhang, Asha Mary Joseph, Laurent Casini, Justine Collier in Nature Communications (2024)

  4. No Access

    Protocol

    Super-Resolution Microscopy of the Bacterial Cell Wall Labeled by Fluorescent D-Amino Acids

    Fluorescent D-amino acids (FDAAs) enable in situ visualization of bacterial cell wall synthesis via their incorporation into peptidoglycan (PG) crosslinks. When combined with super-resolution microscopy, FDAAs...

    Chen Zhang, Suliana Manley in The Bacterial Cell Wall (2024)

  5. No Access

    Article

    Optical microscopy gets down to angstroms

    Super-resolution microscopy at ångström precision could pave the way to optical structural biology in cells.

    Giorgio Tortarolo, Suliana Manley in Nature Biotechnology (2023)

  6. No Access

    Article

    Event-driven acquisition for content-enriched microscopy

    A common goal of fluorescence microscopy is to collect data on specific biological events. Yet, the event-specific content that can be collected from a sample is limited, especially for rare or stochastic proc...

    Dora Mahecic, Willi L. Stepp, Chen Zhang, Juliette Griffié in Nature Methods (2022)

  7. Article

    Author Correction: Single-molecule localization microscopy

    Mickaël Lelek, Melina T. Gyparaki, Gerti Beliu in Nature Reviews Methods Primers (2022)

  8. No Access

    Article

    Imaging cell biology

    Imaging technologies drive discovery in cell biology. Innovations in microscopy hardware, imaging methods and computational analysis of large-scale, complex datasets can increase imaging resolution, definition...

    Brenda Andrews, Jae-Byum Chang, Lucy Collinson, Dong Li in Nature Cell Biology (2022)

  9. Article

    Single-molecule localization microscopy

    Single-molecule localization microscopy (SMLM) describes a family of powerful imaging techniques that dramatically improve spatial resolution over standard, diffraction-limited microscopy techniques and can im...

    Mickaël Lelek, Melina T. Gyparaki, Gerti Beliu in Nature Reviews Methods Primers (2021)

  10. No Access

    Article

    Distinct fission signatures predict mitochondrial degradation or biogenesis

    Mitochondrial fission is a highly regulated process that, when disrupted, can alter metabolism, proliferation and apoptosis13. Dysregulation has been linked to neurodegeneration3,4, cardiovascular disease3 and c...

    Tatjana Kleele, Timo Rey, Julius Winter, Sofia Zaganelli, Dora Mahecic in Nature (2021)

  11. No Access

    Article

    Mitochondrial RNA granules are fluid condensates positioned by membrane dynamics

    Mitochondria contain the genetic information and expression machinery to produce essential respiratory chain proteins. Within the mitochondrial matrix, newly synthesized RNA, RNA processing proteins and mitori...

    Timo Rey, Sofia Zaganelli, Emilie Cuillery, Evangelia Vartholomaiou in Nature Cell Biology (2020)

  12. No Access

    Article

    Homogeneous multifocal excitation for high-throughput super-resolution imaging

    Super-resolution microscopies have become an established tool in biological research. However, imaging throughput remains a main bottleneck in acquiring large datasets required for quantitative biology. Here w...

    Dora Mahecic, Davide Gambarotto, Kyle M. Douglass, Denis Fortun in Nature Methods (2020)

  13. Article

    Open Access

    Waveguide-PAINT offers an open platform for large field-of-view super-resolution imaging

    Super-resolution microscopies based on the localization of single molecules have been widely adopted due to their demonstrated performance and their accessibility resulting from open software and simple hardwa...

    Anna Archetti, Evgenii Glushkov, Christian Sieben, Anton Stroganov in Nature Communications (2019)

  14. No Access

    Article

    EZH2 oncogenic mutations drive epigenetic, transcriptional, and structural changes within chromatin domains

    Chromatin is organized into topologically associating domains (TADs) enriched in distinct histone marks. In cancer, gain-of-function mutations in the gene encoding the enhancer of zeste homolog 2 protein (EZH2...

    Maria C. Donaldson-Collier, Stephanie Sungalee, Marie Zufferey in Nature Genetics (2019)

  15. No Access

    Article

    Multicolor single-particle reconstruction of protein complexes

    Single-particle reconstruction (SPR) from electron microscopy (EM) images is widely used in structural biology, but it lacks direct information on protein identity. To address this limitation, we developed a c...

    Christian Sieben, Niccolò Banterle, Kyle M. Douglass, Pierre Gönczy in Nature Methods (2018)

  16. No Access

    Article

    TORC1 organized in inhibited domains (TOROIDs) regulate TORC1 activity

    In budding yeast, glucose withdrawal, via the Rag GTPases, leads to TORC1 inhibition through its re-organization into a giant, vacuole-associated helix named a TOROID (TORC1 organized in inhibited domain).

    Manoël Prouteau, Ambroise Desfosses, Christian Sieben, Clélia Bourgoint in Nature (2017)

  17. No Access

    Article

    Super-resolution imaging of multiple cells by optimized flat-field epi-illumination

    An epi-illumination system based on microlens arrays enables field-independent imaging of multiple cells with nanoscale resolution and large field of views.

    Kyle M. Douglass, Christian Sieben, Anna Archetti, Ambroise Lambert in Nature Photonics (2016)

  18. Article

    Open Access

    In Situ Characterization of Bak Clusters Responsible for Cell Death Using Single Molecule Localization Microscopy

    Apoptosis plays a pivotal role in development and tissue homeostasis in multicellular organisms. Clustering of Bak proteins on the mitochondrial outer membrane is responsible for the induction of apoptosis by ...

    Yusuke Nasu, Alexander Benke, Satoko Arakawa, Go J. Yoshida in Scientific Reports (2016)

  19. No Access

    Article

    Quantitative evaluation of software packages for single-molecule localization microscopy

    This Analysis reports a comparison of current software packages for single-molecule localization in localization-based super-resolution imaging. Performance of the participating software on synthetic, biologic...

    Daniel Sage, Hagai Kirshner, Thomas Pengo, Nico Stuurman, Junhong Min in Nature Methods (2015)

  20. Article

    Open Access

    FALCON: fast and unbiased reconstruction of high-density super-resolution microscopy data

    Super resolution microscopy such as STORM and (F)PALM is now a well known method for biological studies at the nanometer scale. However, conventional imaging schemes based on sparse activation of photo-switcha...

    Junhong Min, Cédric Vonesch, Hagai Kirshner, Lina Carlini in Scientific Reports (2014)

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