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  1. Article

    Open Access

    Whole genome and RNA sequencing analyses for 254 Taiwanese hepatocellular carcinomas

    Comprehensive and integrative analysis of hepatocellular carcinoma (HCC) is important. In this study, we explored Taiwanese HCCs using multi-omics analyses.

    Ya-Sian Chang, Siang-Jyun Tu, Hong-Da Chen, Chin-Chun Chung in Biomarker Research (2023)

  2. No Access

    Article

    Integrated genomic analyses of hepatocellular carcinoma

    Genomic alterations play important roles in the development of cancer. We explored the impact of protein-coding genes and transcriptomic changes on clinical and molecular alterations in Taiwanese hepatocellula...

    Ya-Sian Chang, Siang-Jyun Tu, Hong-Da Chen, Ming-Hon Hsu in Hepatology International (2023)

  3. Article

    Open Access

    Single-cell RNA sequencing of immune cells in patients with acute gout

    Cell subpopulations in the blood and joint fluid of patients with gout are poorly understood. Single-cell RNA sequencing and bioinformatic tools were used to identify cell subsets and their gene signatures in ...

    Jan-Gowth Chang, Siang-Jyun Tu, Chung-Ming Huang, Yu-Chia Chen in Scientific Reports (2022)

  4. Article

    Open Access

    Mutation profile of non-small cell lung cancer revealed by next generation sequencing

    Precision therapy for lung cancer requires comprehensive genomic analyses. Specific effects of targeted therapies have been reported in Asia populations, including Taiwanese, but genomic studies have rarely be...

    Ya-Sian Chang, Siang-Jyun Tu, Yu-Chia Chen, Ting-Yuan Liu in Respiratory Research (2021)

  5. Article

    Open Access

    Multi-omics profiling reveals microRNA-mediated insulin signaling networks

    MicroRNAs (miRNAs) play a key role in mediating the action of insulin on cell growth and the development of diabetes. However, few studies have been conducted to provide a comprehensive overview of the miRNA-m...

    Yang-Chi-Dung Lin, Hsi-Yuan Huang, Sirjana Shrestha, Chih-Hung Chou in BMC Bioinformatics (2020)

  6. Article

    Open Access

    Enterotype-based Analysis of Gut Microbiota along the Conventional Adenoma-Carcinoma Colorectal Cancer Pathway

    The dysbiosis of human gut microbiota is strongly associated with the development of colorectal cancer (CRC). The dysbiotic features of the transition from advanced polyp to early-stage CRC are largely unknown...

    Tzu-Wei Yang, Wei-Hsiang Lee, Siang-Jyun Tu, Wei-Chih Huang in Scientific Reports (2019)