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  1. No Access

    Article

    Next questions in autophagy

    Our understanding of the basic mechanisms of autophagy is growing, but many questions remain about the types of autophagy cells use, when they use them, and how they function in different contexts. We asked em...

    Ana Maria Cuervo, Zvulun Elazar, Chantell Evans, Liang Ge in Nature Cell Biology (2024)

  2. Article

    Open Access

    Ageing-associated changes in transcriptional elongation influence longevity

    Physiological homeostasis becomes compromised during ageing, as a result of impairment of cellular processes, including transcription and RNA splicing14. However, the molecular mechanisms leading to the loss of ...

    Cédric Debès, Antonios Papadakis, Sebastian Grönke, Özlem Karalay, Luke S. Tain in Nature (2023)

  3. Article

    Open Access

    Modulation of AMPK/ TET2/ 5-hmC axis in response to metabolic alterations as a novel pathway for obesity-related colorectal cancer development

    Obesity is a major risk factor for colorectal cancer (CRC). Sustained hyperglycemia destabilizes tumor suppressor ten-eleven translocation (TET) 2, which is a substrate of AMPK, thereby dysregulating 5-hydroxy...

    Takashi Kon, Yu Sasaki, Yasuhiko Abe, Yusuke Onozato, Makoto Yagi in Scientific Reports (2023)

  4. Article

    Author Correction: LC3 lipidation is essential for TFEB activation during the lysosomal damage response to kidney injury

    Shuhei Nakamura, Saki Shigeyama, Satoshi Minami, Takayuki Shima in Nature Cell Biology (2022)

  5. Article

    Open Access

    Effectiveness of Tiotropium/Olodaterol in the Real World: A Post Hoc Subgroup Analysis After the First Year of Use

    Real-world evidence is needed to optimize pharmacotherapy for chronic obstructive pulmonary disease (COPD). The effectiveness of inhaled tiotropium/olodaterol according to baseline symptoms and previous COPD t...

    Atsuyasu Sato, Ai Miyazaki, Shuhei Nakamura in Advances in Therapy (2022)

  6. No Access

    Article

    Intramural esophageal dissection with eosinophilic esophagitis

    Intramural esophageal dissection (IED), like esophageal perforation, is a rare complication of eosinophilic esophagitis (EoE). A 44-year-old woman who had experienced EoE for 8 years complained of food impacti...

    Matsuki Umehara, Yasuhiko Abe, Yu Sasaki in Clinical Journal of Gastroenterology (2022)

  7. No Access

    Article

    Atypical jejunal follicular lymphoma with severe stricture

    The typical macroscopic appearance of gastrointestinal follicular lymphoma (FL) are multiple white granules or small white polyps, called multiple lymphomatous polyposis type, and subsequent mass lesions with ...

    Hiroki Goto, Yu Sasaki, Yasuhiko Abe, Takashi Kon in Clinical Journal of Gastroenterology (2022)

  8. No Access

    Chapter and Conference Paper

    Security Analysis via Algebraic Attack Against “A New Encryption Scheme for Multivariate Quadratic System”

    A Gröbner basis algorithm computes a good basis for an ideal of a polynomial ring and appears in various situations of cryptography. In particular, it has been used in the security analysis of multivariate pub...

    Yasuhiko Ikematsu, Shuhei Nakamura in Proceedings of the Seventh International C… (2022)

  9. No Access

    Chapter

    Autophagy in Aging and Longevity

    Macroautophagy (autophagy) is an evolutionally conserved cytoplasmic degradation system in which varieties of materials are sequestered by a double membrane structure, called autophagosome, and delivered to th...

    Shuhei Nakamura, Tatsuya Shioda, Tamotsu Yoshimori in Aging Mechanisms II (2022)

  10. Article

    Open Access

    Real-world effectiveness of early intervention with fixed-dose tiotropium/olodaterol vs tiotropium in Japanese patients with COPD: a high-dimensional propensity score–matched cohort analysis

    Escalation to triple therapy (long-acting muscarinic antagonist/β2-agonist, inhaled corticosteroid [ICS]) in chronic obstructive pulmonary disorder (COPD) is recommended for patients on LAMA/LABA combinations wit...

    Shigeo Muro, Masaru Suzuki, Shuhei Nakamura, Jocelyn Ruoyi Wang in Respiratory Research (2021)

  11. No Access

    Chapter and Conference Paper

    Security Analysis on an ElGamal-Like Multivariate Encryption Scheme Based on Isomorphism of Polynomials

    Isomorphism of polynomials with two secrets (IP2S) problem was proposed by Patarin et al. at Eurocrypt 1996 and the problem is to find two secret linear maps filling in the gap between two polynomial maps over...

    Yasuhiko Ikematsu, Shuhei Nakamura, Bagus Santoso in Information Security and Cryptology (2021)

  12. No Access

    Chapter and Conference Paper

    Improving Thomae-Wolf Algorithm for Solving Underdetermined Multivariate Quadratic Polynomial Problem

    The multivariate quadratic polynomial problem ( \(\mathcal MQ\) M ...

    Hiroki Furue, Shuhei Nakamura, Tsuyoshi Takagi in Post-Quantum Cryptography (2021)

  13. No Access

    Article

    LC3 lipidation is essential for TFEB activation during the lysosomal damage response to kidney injury

    Sensing and clearance of dysfunctional lysosomes is critical for cellular homeostasis. Here we show that transcription factor EB (TFEB)—a master transcriptional regulator of lysosomal biogenesis and autophagy—...

    Shuhei Nakamura, Saki Shigeyama, Satoshi Minami, Takayuki Shima in Nature Cell Biology (2020)

  14. Article

    Open Access

    Age-dependent loss of adipose Rubicon promotes metabolic disorders via excess autophagy

    The systemic decline in autophagic activity with age impairs homeostasis in several tissues, leading to age-related diseases. A mechanistic understanding of adipocyte dysfunction with age could help to prevent...

    Tadashi Yamamuro, Tsuyoshi Kawabata, Atsunori Fukuhara in Nature Communications (2020)

  15. No Access

    Chapter and Conference Paper

    Revisiting the Minrank Problem on Multivariate Cryptography

    The minrank problem is often considered in the cryptanalysis of multivariate cryptography and code-based cryptography. There have been many multivariate cryptosystems proven insecure due to their weakness agai...

    Yacheng Wang, Yasuhiko Ikematsu, Shuhei Nakamura in Information Security Applications (2020)

  16. Article

    Open Access

    The Respimat® Soft Mist Inhaler: Implications of Drug Delivery Characteristics for Patients

    Successful treatment for respiratory diseases relies on effective delivery of medication to the lungs using an inhalation device. Different inhalers have distinct characteristics affecting drug administration ...

    Takashi Iwanaga, Yuji Tohda, Shuhei Nakamura, Yasunori Suga in Clinical Drug Investigation (2019)

  17. Article

    Open Access

    Suppression of autophagic activity by Rubicon is a signature of aging

    Autophagy, an evolutionarily conserved cytoplasmic degradation system, has been implicated as a convergent mechanism in various longevity pathways. Autophagic activity decreases with age in several organisms, ...

    Shuhei Nakamura, Masaki Oba, Mari Suzuki, Atsushi Takahashi in Nature Communications (2019)

  18. Article

    Open Access

    Small nucleoli are a cellular hallmark of longevity

    Animal lifespan is regulated by conserved metabolic signalling pathways and specific transcription factors, but whether these pathways affect common downstream mechanisms remains largely elusive. Here we show ...

    Varnesh Tiku, Chirag Jain, Yotam Raz, Shuhei Nakamura in Nature Communications (2017)

  19. No Access

    Article

    Essential role for GABARAP autophagy proteins in interferon-inducible GTPase-mediated host defense

    Various intracellular pathogens attempt to hide from innate cytosolic sensors by forming vacuoles. Yamamoto and colleagues show that the autophagy-related protein Gate-16, which is induced by interferon-γ, is ...

    Miwa Sasai, Naoya Sakaguchi, Ji Su Ma, Shuhei Nakamura in Nature Immunology (2017)

  20. Article

    Open Access

    Mondo complexes regulate TFEB via TOR inhibition to promote longevity in response to gonadal signals

    Germline removal provokes longevity in several species and shifts resources towards survival and repair. Several Caenorhabditis elegans transcription factors regulate longevity arising from germline removal; yet,...

    Shuhei Nakamura, Özlem Karalay, Philipp S. Jäger, Makoto Horikawa in Nature Communications (2016)

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