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  1. Article

    Open Access

    Complexity of avian evolution revealed by family-level genomes

    Despite tremendous efforts in the past decades, relationships among main avian lineages remain heavily debated without a clear resolution. Discrepancies have been attributed to diversity of species sampled, ph...

    Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González in Nature (2024)

  2. Article

    Open Access

    Adaptive expansion of ERVK solo-LTRs is associated with Passeriformes speciation events

    Endogenous retroviruses (ERVs) are ancient retroviral remnants integrated in host genomes, and commonly deleted through unequal homologous recombination, leaving solitary long terminal repeats (solo-LTRs). Thi...

    Guangji Chen, Dan Yu, Yu Yang, **ang Li, **ao**g Wang in Nature Communications (2024)

  3. Article

    Open Access

    Gene flow and an anomaly zone complicate phylogenomic inference in a rapidly radiated avian family (Prunellidae)

    Resolving the phylogeny of rapidly radiating lineages presents a challenge when building the Tree of Life. An Old World avian family Prunellidae (Accentors) comprises twelve species that rapidly diversified at...

    Zhiyong Jiang, Wenqing Zang, Per G. P. Ericson, Gang Song, Shaoyuan Wu in BMC Biology (2024)

  4. Article

    RETRACTED ARTICLE: Coordinated development of airport economy in China: impact of "Airport-Industry-City" coordination on regional economic performance

    Shaohong Feng, Yangmin Bai in Annals of Operations Research (2023)

  5. No Access

    Article

    Species-specific traits mediate avian demographic responses under past climate change

    Anticipating species’ responses to environmental change is a pressing mission in biodiversity conservation. Despite decades of research investigating how climate change may affect population sizes, historical ...

    Ryan R. Germain, Shaohong Feng, Guangji Chen, Gary R. Graves in Nature Ecology & Evolution (2023)

  6. Article

    Open Access

    Draft genome assemblies of four manakins

    Manakins are a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family has served as a good model for the...

    Xuemei Li, Rongsheng Gao, Guangji Chen, Alivia Lee Price in Scientific Data (2022)

  7. Article

    Open Access

    Genomic insights into the secondary aquatic transition of penguins

    Penguins lost the ability to fly more than 60 million years ago, subsequently evolving a hyper-specialized marine body plan. Within the framework of a genome-scale, fossil-inclusive phylogeny, we identify key ...

    Theresa L. Cole, Chengran Zhou, Miaoquan Fang, Hailin Pan in Nature Communications (2022)

  8. No Access

    Article

    Spatial structure of Zhengzhou Airport Economy Zone: its evolution and drivers

    This article uses ARCGIS software to conduct circle and hot spot analysis of enterprises within 10 km radius of Zhengzhou International Airport to track the evolution of the area and its spatial structure. Fir...

    Yangmin Bai, Shaohong Feng in Arabian Journal of Geosciences (2021)

  9. Article

    Open Access

    Author Correction: Dense sampling of bird diversity increases power of comparative genomics

    A Correction to this paper has been published: https://doi.org/10.1038/s41586-021-03473-8.

    Shaohong Feng, Josefin Stiller, Yuan Deng, Joel Armstrong, Qi Fang in Nature (2021)

  10. No Access

    Article

    Fuzzy Comprehensive Evaluation of the Apron Control Transfer Management Evaluation System

    The apron operation management evaluation is one of the measures to test the effect of apron control transfer management. Due to the relatively short implementation time of apron control transfer management in...

    Meng Lv, Shaohong Feng in Arabian Journal for Science and Engineering (2021)

  11. No Access

    Article

    Temporary teams: current research focus and future directions

    Temporary teams quickly adapt to changes in the external environment with members diversity, task importance, and limited time, have attracted more and more attention from scholars. Therefore, this paper uses ...

    Meng Lv, Shaohong Feng in Quality & Quantity (2021)

  12. Article

    Open Access

    Progressive Cactus is a multiple-genome aligner for the thousand-genome era

    New genome assemblies have been arriving at a rapidly increasing pace, thanks to decreases in sequencing costs and improvements in third-generation sequencing technologies13. For example, the number of vertebrat...

    Joel Armstrong, Glenn Hickey, Mark Diekhans, Ian T. Fiddes, Adam M. Novak in Nature (2020)

  13. No Access

    Article

    Dense sampling of bird diversity increases power of comparative genomics

    Whole-genome sequencing projects are increasingly populating the tree of life and characterizing biodiversity14. Sparse taxon sampling has previously been proposed to confound phylogenetic inference5, and captur...

    Shaohong Feng, Josefin Stiller, Yuan Deng, Joel Armstrong, Qi Fang in Nature (2020)

  14. No Access

    Article

    Dynamic evolutionary history and gene content of sex chromosomes across diverse songbirds

    Songbirds have a species number close to that of mammals and are classic models for studying speciation and sexual selection. Sex chromosomes are hotspots of both processes, yet their evolutionary history in s...

    Luohao Xu, Gabriel Auer, Valentina Peona, Alexander Suh in Nature Ecology & Evolution (2019)

  15. Article

    Author Correction: Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours

    In the version of this Article originally published, there were some errors in the affiliations: Stephen J. O’Brien’s affiliations were incorrectly listed as 8,9; they should have been 7,9. Affiliation 3 was i...

    Anna V. Kukekova, Jennifer L. Johnson, in Nature Ecology & Evolution (2018)

  16. Article

    Open Access

    Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours

    Strains of red fox (Vulpes vulpes) with markedly different behavioural phenotypes have been developed in the famous long-term selective breeding programme known as the Russian farm-fox experiment. Here we sequenc...

    Anna V. Kukekova, Jennifer L. Johnson, in Nature Ecology & Evolution (2018)

  17. No Access

    Chapter and Conference Paper

    Dynamic Reverse Furthest Neighbor Querying Algorithm of Moving Objects

    With the development of wireless communications and positioning technologies, locations of moving objects are highly demanding services. The assumption of static data is majorly applied on previous researches...

    Bohan Li, Chao Zhang, Weitong Chen, Yingbao Yang in Advanced Data Mining and Applications (2016)

  18. Article

    Open Access

    Reference genome of wild goat (capra aegagrus) and sequencing of goat breeds provide insight into genic basis of goat domestication

    Domestic goats (Capra hircus) have been selected to play an essential role in agricultural production systems, since being domesticated from their wild progenitor, bezoar (Capra aegagrus). A detailed understandin...

    Yang Dong, **aolei Zhang, Min **e, Babak Arefnezhad, Zongji Wang in BMC Genomics (2015)