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  1. Article

    Open Access

    Complexity of avian evolution revealed by family-level genomes

    Despite tremendous efforts in the past decades, relationships among main avian lineages remain heavily debated without a clear resolution. Discrepancies have been attributed to diversity of species sampled, ph...

    Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González in Nature (2024)

  2. Article

    Open Access

    Adaptive expansion of ERVK solo-LTRs is associated with Passeriformes speciation events

    Endogenous retroviruses (ERVs) are ancient retroviral remnants integrated in host genomes, and commonly deleted through unequal homologous recombination, leaving solitary long terminal repeats (solo-LTRs). Thi...

    Guangji Chen, Dan Yu, Yu Yang, **ang Li, **ao**g Wang in Nature Communications (2024)

  3. Article

    Open Access

    The complete and fully-phased diploid genome of a male Han Chinese

    Since the release of the complete human genome, the priority of human genomic study has now been shifting towards closing gaps in ethnic diversity. Here, we present a fully phased and well-annotated diploid hu...

    Chentao Yang, Yang Zhou, Yanni Song, Dongya Wu, Yan Zeng, Lei Nie in Cell Research (2023)

  4. No Access

    Article

    Species-specific traits mediate avian demographic responses under past climate change

    Anticipating species’ responses to environmental change is a pressing mission in biodiversity conservation. Despite decades of research investigating how climate change may affect population sizes, historical ...

    Ryan R. Germain, Shaohong Feng, Guangji Chen, Gary R. Graves in Nature Ecology & Evolution (2023)

  5. Article

    Open Access

    Draft genome assemblies of four manakins

    Manakins are a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family has served as a good model for the...

    Xuemei Li, Rongsheng Gao, Guangji Chen, Alivia Lee Price in Scientific Data (2022)

  6. Article

    Open Access

    Author Correction: Dense sampling of bird diversity increases power of comparative genomics

    A Correction to this paper has been published: https://doi.org/10.1038/s41586-021-03473-8.

    Shaohong Feng, Josefin Stiller, Yuan Deng, Joel Armstrong, Qi Fang in Nature (2021)

  7. No Access

    Article

    Dense sampling of bird diversity increases power of comparative genomics

    Whole-genome sequencing projects are increasingly populating the tree of life and characterizing biodiversity14. Sparse taxon sampling has previously been proposed to confound phylogenetic inference5, and captur...

    Shaohong Feng, Josefin Stiller, Yuan Deng, Joel Armstrong, Qi Fang in Nature (2020)