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  1. Article

    Open Access

    Experimental and numerical investigation of polymer pore-clogging in micromodels

    Polymers have been used effectively in the Oil & Gas Industry for a variety of field applications, such as enhanced oil recovery (EOR), well conformance, mobility control, and others. Polymer intermolecular in...

    Antonia Sugar, Maged Serag, Ulrich Buttner, Marwan Fahs in Scientific Reports (2023)

  2. Article

    Open Access

    Bioengineering of air-filled protein nanoparticles by genetic and chemical functionalization

    Various bacteria and archaea, including halophilic archaeon Halobacterium sp. NRC-1 produce gas vesicle nanoparticles (GVNPs), a unique class of stable, air-filled intracellular proteinaceous nanostructures. GVNP...

    Ram Karan, Dominik Renn, Shuho Nozue, Lingyun Zhao in Journal of Nanobiotechnology (2023)

  3. Article

    Open Access

    Single-molecule imaging and microfluidic platform reveal molecular mechanisms of leukemic cell rolling

    Hematopoietic stem/progenitor cell (HSPC) and leukemic cell homing is an important biological phenomenon that occurs through key interactions between adhesion molecules. Tethering and rolling of the cells on e...

    Bader Al Alwan, Karmen AbuZineh, Shuho Nozue in Communications Biology (2021)

  4. Article

    Open Access

    Initial state of DNA-Dye complex sets the stage for protein induced fluorescence modulation

    Protein-induced fluorescence enhancement (PIFE) is a popular tool for characterizing protein-DNA interactions. PIFE has been explained by an increase in local viscosity due to the presence of the protein resid...

    Fahad Rashid, Vlad-Stefan Raducanu, Manal S. Zaher in Nature Communications (2019)

  5. Article

    Open Access

    Entangled polymer dynamics beyond reptation

    Macroscopic properties of polymers arise from microscopic entanglement of polymer chains. Entangled polymer dynamics have been described theoretically by time- and space-averaged relaxation modes of single cha...

    Maram Abadi, Maged F. Serag, Satoshi Habuchi in Nature Communications (2018)

  6. Article

    Open Access

    Conserved linear dynamics of single-molecule Brownian motion

    Macromolecular diffusion in homogeneous fluid at length scales greater than the size of the molecule is regarded as a random process. The mean-squared displacement (MSD) of molecules in this regime increases l...

    Maged F. Serag, Satoshi Habuchi in Nature Communications (2017)

  7. Article

    Open Access

    Controlling photophysical properties of ultrasmall conjugated polymer nanoparticles through polymer chain packing

    Applications of conjugated polymer nanoparticles (Pdots) for imaging and sensing depend on their size, fluorescence brightness and intraparticle energy transfer. The molecular design of conjugated polymers (CP...

    Hubert Piwoński, Tsuyoshi Michinobu, Satoshi Habuchi in Nature Communications (2017)

  8. Article

    Open Access

    Single-molecule diffusion and conformational dynamics by spatial integration of temporal fluctuations

    Single-molecule localization and tracking has been used to translate spatiotemporal information of individual molecules to map their diffusion behaviours. However, accurate analysis of diffusion behaviours and...

    Maged F. Serag, Maram Abadi, Satoshi Habuchi in Nature Communications (2014)

  9. No Access

    Article

    A general approach to break the concentration barrier in single-molecule imaging

    A method for single-molecule imaging at high protein concentrations is presented and demonstrated in the context of DNA replication in cell extracts.

    Anna B Loveland, Satoshi Habuchi, Johannes C Walter, Antoine M van Oijen in Nature Methods (2012)

  10. No Access

    Article

    Conformation and physics of polymer chains: a single-molecule perspective

    Single-molecule optical detection and spectroscopy has emerged in recent years as an excellent tool for structural and dynamic characterization of materials and biological systems on nanometer scales. Measurin...

    Martin Vacha, Satoshi Habuchi in NPG Asia Materials (2010)

  11. No Access

    Article

    Photo-induced protonation/deprotonation in the GFP-like fluorescent protein Dronpa: mechanism responsible for the reversible photoswitching

    Recently, reversible photoswitching in bulk samples or in individual molecules of Dronpa, a mutant of a green fluorescent protein (GFP)-like fluorescent protein, has been demonstrated. Intense irradiation at 4...

    Satoshi Habuchi, Peter Dedecker, Jun-ichi Hotta in Photochemical & Photobiological Sciences (2006)

  12. No Access

    Chapter

    Single-Molecule Surface-Enhanced Resonance Raman Spectroscopy of the Enhanced Green Fluorescent Protein EGFP

    We have investigated SM-SERRS spectra and intensity trajectories of individual EGFP molecules adsorbed on silver colloids. Spectral jumps, in a timescale of seconds, were observed in the SM-SERRS spectral traj...

    Satoshi Habuchi, Johan Hofkens in Surface-Enhanced Raman Scattering (2006)

  13. No Access

    Article

    Energy Gap Dependence of the Nonradiative Decay Rate Constant of 1-Anilino-8-naphthalene Sulfonate in Reverse Micelles

    Steady-state and picosecond time-resolved fluorescence spectroscopies were conducted to study excited state properties of 1-anilino-8-naphthalene sulfonate (ANS) in reverse AOT (sodium bis(2-ethylhexyl)sulfosu...

    Noboru Kitamura, Norio Sakata, Haeng-Boo Kim, Satoshi Habuchi in Analytical Sciences (1999)