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  1. Article

    Open Access

    Multicenter integrated analysis of noncoding CRISPRi screens

    The ENCODE Consortium’s efforts to annotate noncoding cis-regulatory elements (CREs) have advanced our understanding of gene regulatory landscapes. Pooled, noncoding CRISPR screens offer a systematic approach to ...

    David Yao, Josh Tycko, ** Woo Oh, Lexi R. Bounds, Sager J. Gosai in Nature Methods (2024)

  2. Article

    Author Correction: Direct characterization of cis-regulatory elements and functional dissection of complex genetic associations using HCR–FlowFISH

    Steven K. Reilly, Sager J. Gosai, Alan Gutierrez, Ava Mackay-Smith in Nature Genetics (2021)

  3. No Access

    Article

    Direct characterization of cis-regulatory elements and functional dissection of complex genetic associations using HCR–FlowFISH

    Effective interpretation of genome function and genetic variation requires a shift from epigenetic map** of cis-regulatory elements (CREs) to characterization of endogenous function. We developed hybridization ...

    Steven K. Reilly, Sager J. Gosai, Alan Gutierrez, Ava Mackay-Smith in Nature Genetics (2021)

  4. Article

    Publisher Correction: Dysregulation of the epigenetic landscape of normal aging in Alzheimer’s disease

    In the version of this article initially published online, the fifth author’s name was given as Alexander Amlie-Wolf. The correct name is Alexandre Amlie-Wolf. The error has been corrected in the print, PDF an...

    Raffaella Nativio, Greg Donahue, Amit Berson, Yemin Lan in Nature Neuroscience (2018)

  5. Article

    Open Access

    Dysregulation of the epigenetic landscape of normal aging in Alzheimer’s disease

    Aging is the strongest risk factor for Alzheimer’s disease (AD), although the underlying mechanisms remain unclear. The chromatin state, in particular through the mark H4K16ac, has been implicated in aging and...

    Raffaella Nativio, Greg Donahue, Amit Berson, Yemin Lan in Nature Neuroscience (2018)

  6. No Access

    Chapter

    Genome-Wide Approaches for RNA Structure Probing

    RNA molecules of all types fold into complex secondary and tertiary structures that are important for their function and regulation. Structural and catalytic RNAs such as ribosomal RNA (rRNA) and transfer RNA ...

    Ian M. Silverman, Nathan D. Berkowitz, Sager J. Gosai, Brian D. Gregory in RNA Processing (2016)