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  1. Article

    Open Access

    Multicenter integrated analysis of noncoding CRISPRi screens

    The ENCODE Consortium’s efforts to annotate noncoding cis-regulatory elements (CREs) have advanced our understanding of gene regulatory landscapes. Pooled, noncoding CRISPR screens offer a systematic approach to ...

    David Yao, Josh Tycko, ** Woo Oh, Lexi R. Bounds, Sager J. Gosai in Nature Methods (2024)

  2. Article

    Open Access

    Assembloid CRISPR screens reveal impact of disease genes in human neurodevelopment

    The assembly of cortical circuits involves the generation and migration of interneurons from the ventral to the dorsal forebrain13, which has been challenging to study at inaccessible stages of late gestation an...

    **angling Meng, David Yao, Kent Imaizumi, **aoyu Chen, Kevin W. Kelley, Noah Reis in Nature (2023)

  3. Article

    Preface: Special Issue on Optimization, Financial Engineering, Risk and Operations Management

    David Yao, Shu-Zhong Zhang, Xun-Yu Zhou in Journal of the Operations Research Society… (2022)

  4. No Access

    Article

    Inter-cellular CRISPR screens reveal regulators of cancer cell phagocytosis

    Monoclonal antibody therapies targeting tumour antigens drive cancer cell elimination in large part by triggering macrophage phagocytosis of cancer cells17. However, cancer cells evade phagocytosis using mechani...

    Roarke A. Kamber, Yoko Nishiga, Bhek Morton, Allison M. Banuelos, Amira A. Barkal in Nature (2021)

  5. No Access

    Article

    CRISPR screens in cancer spheroids identify 3D growth-specific vulnerabilities

    Cancer genomics studies have identified thousands of putative cancer driver genes1. Development of high-throughput and accurate models to define the functions of these genes is a major challenge. Here we devised ...

    Kyuho Han, Sarah E. Pierce, Amy Li, Kaitlyn Spees, Gray R. Anderson in Nature (2020)

  6. No Access

    Article

    Structural controls on granitoid-hosted gold mineralization and paleostress history of the Edikan gold deposits, Kumasi Basin, southwestern Ghana

    The > 9 Moz total aggregate gold endowment at the Edikan mine, Kumasi Basin, Ghana, is contained within a cluster of orogenic gold deposits located along the Akropong fault zone. The granitoid-hosted orebodies...

    Ghislain Tourigny, Markos D. Tranos, Quentin Masurel, Oliver Kreuzer in Mineralium Deposita (2019)

  7. Article

    Open Access

    Mitigation of off-target toxicity in CRISPR-Cas9 screens for essential non-coding elements

    Pooled CRISPR-Cas9 screens are a powerful method for functionally characterizing regulatory elements in the non-coding genome, but off-target effects in these experiments have not been systematically evaluated...

    Josh Tycko, Michael Wainberg, Georgi K. Marinov, Oana Ursu in Nature Communications (2019)

  8. Article

    Open Access

    Inflammatory expression profiles in monocyte-to-macrophage differentiation in patients with systemic lupus erythematosus and relationship with atherosclerosis

    Our objectives were to examine mononuclear cell gene expression profiles in patients with systemic lupus erythematosus (SLE) and healthy controls and to compare subsets with and without atherosclerosis to dete...

    Benjamin D Korman, Chiang-Ching Huang, Carly Skamra in Arthritis Research & Therapy (2014)

  9. No Access

    Article

    Editorial introduction

    Bharat T. Doshi, David Yao in Queueing Systems (1995)

  10. No Access

    Chapter

    The Viscoplasticity Theory Based on Overstress Applied to Ratchetting and Cyclic Hardening

    The cyclic neutral version of the theory of viscoplasticity based on over-stress (VBO) is introduced and applied to predict the zero-to-tension ratchetting behavior of a Tialloy at room temperature. The experi...

    Erhard Krempl, David Yao in Low Cycle Fatigue and Elasto-Plastic Behaviour of Materials (1987)