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Article
Open AccessBABAR: an R package to simplify the normalisation of common reference design microarray-based transcriptomic datasets
The development of DNA microarrays has facilitated the generation of hundreds of thousands of transcriptomic datasets. The use of a common reference microarray design allows existing transcriptomic data to be ...
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Article
Open AccessThe transcriptional programme of Salmonella enterica serovar Typhimurium reveals a key role for tryptophan metabolism in biofilms
Biofilm formation enhances the capacity of pathogenic Salmonella bacteria to survive stresses that are commonly encountered within food processing and during host infection. The persistence of Salmonella within t...
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Article
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
Bacterial small RNAs are generally thought to repress mRNAs at the level of translational initiation by binding in the 5′ untranslated region. Salmonella typhimurium MicC is now shown to target the ompD mRNA codi...
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Article
Open AccessA short-oligonucleotide microarray that allows improved detection of gastrointestinal tract microbial communities
The human gastrointestinal (GI) tract contains a diverse collection of bacteria, most of which are unculturable by conventional microbiological methods. Increasingly molecular profiling techniques are being em...
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Article
Open AccessA global view of Staphylococcus aureus whole genome expression upon internalization in human epithelial cells
Staphylococcus aureus, a leading cause of chronic or acute infections, is traditionally considered an extracellular pathogen despite repeated reports of S. aureus internalization by a variety of non-myeloid cells...
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Article
Comparative genomics of phages and prophages in lactic acid bacteria
Comparative phage genomics has become possible due to the availability of more than 100 complete phage genome sequences and the development of powerful bioinformatics tools. This technology, profiting from cla...
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Chapter
Comparative genomics of phages and prophages in lactic acid bacteria
Comparative phage genomics has become possible due to the availability of more than 100 complete phage genome sequences and the development of powerful bioinformatics tools. This technology, profiting from cla...
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Article
Molecular Ecology and Evolution of Streptococcus thermophilus Bacteriophages—a Review
Bacteriophages attacking Streptococcus thermophilus, a lactic acid bacterium used in milk fermentation, are a threat to the dairy industry. These small isometric-headed phages possess double-stranded DNA genom...
