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  1. Article

    Open Access

    Software tool for internal standard based normalization of lipids, and effect of data-processing strategies on resulting values

    Lipidomics, the comprehensive measurement of lipids within a biological system or substrate, is an emerging field with significant potential for improving clinical diagnosis and our understanding of health and...

    Jeremy P. Koelmel, Jason A. Cochran, Candice Z. Ulmer in BMC Bioinformatics (2019)

  2. Article

    Open Access

    LipidMatch: an automated workflow for rule-based lipid identification using untargeted high-resolution tandem mass spectrometry data

    Lipids are ubiquitous and serve numerous biological functions; thus lipids have been shown to have great potential as candidates for elucidating biomarkers and pathway perturbations associated with disease. Me...

    Jeremy P. Koelmel, Nicholas M. Kroeger, Candice Z. Ulmer in BMC Bioinformatics (2017)

  3. Article

    Expanding Lipidome Coverage Using LC-MS/MS Data-Dependent Acquisition with Automated Exclusion List Generation

    Untargeted omics analyses aim to comprehensively characterize biomolecules within a biological system. Changes in the presence or quantity of these biomolecules can indicate important biological perturbations,...

    Jeremy P. Koelmel, Nicholas M. Kroeger in Journal of The American Society for Mass S… (2017)

  4. No Access

    Protocol

    A Robust Lipidomics Workflow for Mammalian Cells, Plasma, and Tissue Using Liquid-Chromatography High-Resolution Tandem Mass Spectrometry

    Lipids have been analyzed in applications including drug discovery, disease etiology elucidation, and natural products. The chemical and structural diversity of lipids requires a tailored lipidomics workflow f...

    Candice Z. Ulmer, Rainey E. Patterson, Jeremy P. Koelmel, Timothy J. Garrett in Lipidomics (2017)