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  1. No Access

    Chapter and Conference Paper

    Empowering Education with LLMs - The Next-Gen Interface and Content Generation

    We propose the first annual workshop on Empowering Education with LLMs - the Next-Gen Interface and Content Generation. This full-day workshop explores ample opportunities in leveraging humans, AI, and learnin...

    Steven Moore, Richard Tong, Anjali Singh in Artificial Intelligence in Education. Post… (2023)

  2. No Access

    Chapter and Conference Paper

    Automated Program Repair Using Generative Models for Code Infilling

    In educational settings, automated program repair techniques serve as a feedback mechanism to guide students working on their programming assignments. Recent work has investigated using large language models (...

    Charles Koutcheme, Sami Sarsa, Juho Leinonen in Artificial Intelligence in Education (2023)

  3. No Access

    Chapter and Conference Paper

    Scaffolding Task Planning Using Abstract Parsons Problems

    Interest is growing in the role of metacognition in computing education. Most work to-date has examined metacognitive approaches of novices learning to code. It has been shown that novices navigate through dis...

    James Prather, John Homer, Paul Denny in Towards a Collaborative Society Through Cr… (2023)

  4. Article

    Open Access

    A standardized nomenclature for mammalian histone genes

    Histones have a long history of research in a wide range of species, leaving a legacy of complex nomenclature in the literature. Community-led discussions at the EMBO Workshop on Histone Variants in 2011 resul...

    Ruth L. Seal, Paul Denny, Elspeth A. Bruford, Anna K. Gribkova in Epigenetics & Chromatin (2022)

  5. No Access

    Article

    Report on the 22nd International Mammalian Genome Conference

    Mohamed Mohideen Quwailid, Michael James Parsons, Paul Denny in Mammalian Genome (2021)

  6. No Access

    Article

    Gamification of student peer review in education: A systematic literature review

    We present the first systematic review of the use of gamification in educational peer review activities. The goal of this work is to understand how gamification has been used to engage students in peer review ...

    Theresia Devi Indriasari, Andrew Luxton-Reilly in Education and Information Technologies (2020)

  7. No Access

    Article

    Guidelines for human gene nomenclature

    Standardized gene naming is crucial for effective communication about genes, and as genomics becomes increasingly important in health care, the need for a consistent language to refer to human genes becomes ev...

    Elspeth A. Bruford, Bryony Braschi, Paul Denny, Tamsin E. M. Jones in Nature Genetics (2020)

  8. Article

    Open Access

    An expanded evaluation of protein function prediction methods shows an improvement in accuracy

    A major bottleneck in our understanding of the molecular underpinnings of life is the assignment of function to proteins. While molecular experiments provide the most reliable annotation of proteins, their rel...

    Yuxiang Jiang, Tal Ronnen Oron, Wyatt T. Clark, Asma R. Bankapur in Genome Biology (2016)

  9. No Access

    Chapter and Conference Paper

    Inferring Student Coding Goals Using Abstract Syntax Trees

    The rapidly growing demand for programming skills has driven improvements in the technologies delivering programming education to students. Intelligent tutoring systems will potentially contribute to solving t...

    Paul Freeman, Ian Watson, Paul Denny in Case-Based Reasoning Research and Development (2016)

  10. Article

    Open Access

    Spir2; a novel QTL on chromosome 4 contributes to susceptibility to pneumococcal infection in mice

    Streptococcus pneumoniae causes over one million deaths worldwide annually, despite recent developments in vaccine and antibiotic therapy. Host susceptibility to pneumococcal infection and disease is controlled b...

    Laura Wisby, Vitor E Fernandes, Daniel R Neill, Aras Kadioglu in BMC Genomics (2013)

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    Book

  12. No Access

    Chapter

    Mouse Genome Map** and Genomics

    Mice probably first became associated with humans after the domestication of grasses, about 10,000–12,000 years ago. More recently, mice have become the most widely used mammalian laboratory animal, in particu...

    Paul Denny in Genome Map** and Genomics in Laboratory Animals (2012)

  13. No Access

    Article

    A major locus conferring susceptibility to infection by Streptococcus pneumoniae in mice

    We have studied the genetics of susceptibility to infection by Streptococcus pneumoniae in mice. Linkage analysis of the F2 generation from a cross between resistant BALB/cO1aHsd and susceptible CBA/CaO1aHsd stra...

    Paul Denny, Elaine Hopes, Neill Gingles, Karl W. Broman in Mammalian Genome (2003)

  14. Article

    What use is the human genome for understanding the mouse?

    Having a working draft of the human genome sequence is proving invaluable to mouse genetic and genomic studies, providing a useful step**-stone towards the finished sequence of the mouse genome.

    Paul Denny, Rachael Bate, Ann-Marie Mallon in Genome Biology (2001)

  15. No Access

    Article

    A radiation hybrid map of mouse genes

    A comprehensive gene-based map of a genome is a powerful tool for genetic studies and is especially useful for the positional cloning and positional candidate approaches. The availability of gene maps for mult...

    Thomas J. Hudson, Deanna M. Church, Simon Greenaway, Huy Nguyen in Nature Genetics (2001)

  16. No Access

    Article

    Genetic, physical, and phenotypic characterization of the Del(13)Svea36H mouse

    The Del(13)Svea36H deletion was recovered from a radiation mutagenesis experiment and represents a valuable resource for investigating gene content and function at this region of mouse Chromosome (Chr) 13 and hu...

    Ruth M. Arkell, Matthew Cadman, Tracy Marsland, Anne Southwell in Mammalian Genome (2001)

  17. Article

    Mouse placental gene expression

    A minimally redundant set of 15,000 mouse cDNAs derived from early and mid-gestation has been used to analyze global patterns of gene expression in the placenta and embryo.

    Paul Denny in Genome Biology (2000)

  18. Article

    Mouse chromosomal deletions

    Mouse chromosomes carrying deletions have been produced using a combination of targeted and random integration of selectable markers followed by specific excision by a recombinase.

    Paul Denny in Genome Biology (2000)

  19. No Access

    Article

    Mouse X Chromosome

    Yvonne Boyd, Paul Denny, Walter Masson, Vivienne Reed, Rosemary Elliott in Mammalian Genome (1999)

  20. No Access

    Article

    A YAC-based physical map of the mouse genome

    A physical map of the mouse genome is an essential tool for both positional cloning and genomic sequencing in this key model system for biomedical research. Indeed, the construction of a mouse physical map wit...

    Chad Nusbaum, Donna K. Slonim, Katrina L. Harris, Bruce W. Birren in Nature Genetics (1999)

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