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  1. Article

    Open Access

    An end-to-end approach for single-cell infrared absorption spectroscopy of bacterial inclusion bodies: from AFM-IR measurement to data interpretation of large sample sets

    Inclusion bodies (IBs) are well-known subcellular structures in bacteria where protein aggregates are collected. Various methods have probed their structure, but single-cell spectroscopy remains challenging. A...

    Wouter Duverger, Grigoria Tsaka, Ladan Khodaparast in Journal of Nanobiotechnology (2024)

  2. Article

    Open Access

    Local structural preferences in sha** tau amyloid polymorphism

    Tauopathies encompass a group of neurodegenerative disorders characterised by diverse tau amyloid fibril structures. The persistence of polymorphism across tauopathies suggests that distinct pathological condi...

    Nikolaos Louros, Martin Wilkinson, Grigoria Tsaka, Meine Ramakers in Nature Communications (2024)

  3. No Access

    Article

    Mechanisms and pathology of protein misfolding and aggregation

    Despite advances in machine learning-based protein structure prediction, we are still far from fully understanding how proteins fold into their native conformation. The conventional notion that polypeptides fo...

    Nikolaos Louros, Joost Schymkowitz in Nature Reviews Molecular Cell Biology (2023)

  4. Article

    Open Access

    Author Correction: Reverse engineering synthetic antiviral amyloids

    Emiel Michiels, Kenny Roose, Rodrigo Gallardo, Ladan Khodaparast in Nature Communications (2023)

  5. Article

    Open Access

    Medin co-aggregates with vascular amyloid-β in Alzheimer’s disease

    Aggregates of medin amyloid (a fragment of the protein MFG-E8, also known as lactadherin) are found in the vasculature of almost all humans over 50 years of age1,2, making it the most common amyloid currently kno...

    Jessica Wagner, Karoline Degenhardt, Marleen Veit, Nikolaos Louros in Nature (2022)

  6. Article

    Open Access

    Bcl-xL acts as an inhibitor of IP3R channels, thereby antagonizing Ca2+-driven apoptosis

    Anti-apoptotic Bcl-2-family members not only act at mitochondria but also at the endoplasmic reticulum, where they impact Ca2+ dynamics by controlling IP3 receptor (IP3R) function. Current models propose distinct...

    Nicolas Rosa, Hristina Ivanova, Larry E. Wagner 2nd in Cell Death & Differentiation (2022)

  7. Article

    Open Access

    Map** the sequence specificity of heterotypic amyloid interactions enables the identification of aggregation modifiers

    Heterotypic amyloid interactions between related protein sequences have been observed in functional and disease amyloids. While sequence homology seems to favour heterotypic amyloid interactions, we have no sy...

    Nikolaos Louros, Meine Ramakers, Emiel Michiels in Nature Communications (2022)

  8. Article

    Open Access

    Structure-based machine-guided map** of amyloid sequence space reveals uncharted sequence clusters with higher solubilities

    The amyloid conformation can be adopted by a variety of sequences, but the precise boundaries of amyloid sequence space are still unclear. The currently charted amyloid sequence space is strongly biased toward...

    Nikolaos Louros, Gabriele Orlando, Matthias De Vleeschouwer in Nature Communications (2020)

  9. Article

    Open Access

    Reverse engineering synthetic antiviral amyloids

    Human amyloids have been shown to interact with viruses and interfere with viral replication. Based on this observation, we employed a synthetic biology approach in which we engineered virus-specific amyloids ...

    Emiel Michiels, Kenny Roose, Rodrigo Gallardo, Ladan Khodaparast in Nature Communications (2020)