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  1. Article

    Open Access

    Diurnal rhythms of wrist temperature are associated with future disease risk in the UK Biobank

    Many chronic disease symptomatologies involve desynchronized sleep-wake cycles, indicative of disrupted biorhythms. This can be interrogated using body temperature rhythms, which have circadian as well as slee...

    Thomas G. Brooks, Nicholas F. Lahens, Gregory R. Grant in Nature Communications (2023)

  2. Article

    Open Access

    RNA splicing analysis using heterogeneous and large RNA-seq datasets

    The ubiquity of RNA-seq has led to many methods that use RNA-seq data to analyze variations in RNA splicing. However, available methods are not well suited for handling heterogeneous and large datasets. Such d...

    Jorge Vaquero-Garcia, Joseph K. Aicher, San Jewell in Nature Communications (2023)

  3. Article

    Open Access

    MOCCASIN: a method for correcting for known and unknown confounders in RNA splicing analysis

    The effects of confounding factors on gene expression analysis have been extensively studied following the introduction of high-throughput microarrays and subsequently RNA sequencing. In contrast, there is a l...

    Barry Slaff, Caleb M. Radens, Paul Jewell, Anupama Jha in Nature Communications (2021)

  4. Article

    Open Access

    A circadian clock regulates efflux by the blood-brain barrier in mice and human cells

    The blood-brain barrier (BBB) is critical for neural function. We report here circadian regulation of the BBB in mammals. Efflux of xenobiotics by the BBB oscillates in mice, with highest levels during the act...

    Shirley L. Zhang, Nicholas F. Lahens, Zhifeng Yue in Nature Communications (2021)

  5. Article

    Open Access

    Comparative evaluation of RNA-Seq library preparation methods for strand-specificity and low input

    Library preparation is a key step in sequencing. For RNA sequencing there are advantages to both strand specificity and working with minute starting material, yet until recently there was no kit available enab...

    Dimitra Sarantopoulou, Soon Yew Tang, Emanuela Ricciotti in Scientific Reports (2019)

  6. Article

    Open Access

    A Pilot Characterization of the Human Chronobiome

    Physiological function, disease expression and drug effects vary by time-of-day. Clock disruption in mice results in cardio-metabolic, immunological and neurological dysfunction; circadian misalignment using f...

    Carsten Skarke, Nicholas F. Lahens, Seth D. Rhoades, Amy Campbell in Scientific Reports (2017)