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  1. Article

    Open Access

    SLiMScape: a protein short linear motif analysis plugin for Cytoscape

    Computational protein short linear motif discovery can use protein interaction information to search for motifs among proteins which share a common interactor. Cytoscape provides a visual interface for protein...

    Kevin T O’Brien, Niall J Haslam, Denis C Shields in BMC Bioinformatics (2013)

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  2. Article

    Open Access

    Profile-based short linear protein motif discovery

    Short linear protein motifs are attracting increasing attention as functionally independent sites, typically 3–10 amino acids in length that are enriched in disordered regions of proteins. Multiple methods hav...

    Niall J Haslam, Denis C Shields in BMC Bioinformatics (2012)

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  3. Chapter and Conference Paper

    SLiMSearch: A Webserver for Finding Novel Occurrences of Short Linear Motifs in Proteins, Incorporating Sequence Context

    Short, linear motifs (SLiMs) play a critical role in many biological processes. The SLiMSearch (Short, Linear Motif Search) webserver is a flexible tool that enables researchers to identify novel occurrences o...

    Norman E. Davey, Niall J. Haslam, Denis C. Shields… in Pattern Recognition in Bioinformatics (2010)

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