26 Result(s)
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Murukarthick Jayakodi
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Article
Plant pangenomes for crop improvement, biodiversity and evolution
Plant genome sequences catalogue genes and the genetic elements that regulate their expression. Such inventories further research aims as diverse as map** the molecular basis of trait diversity in domesticat...
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Improved biomass and metabolite production in hairy root culture in various genotypes of Panax ginseng through genetic transformation
The economic important medicinal plant, Panax ginseng, encompasses a diverse array of pharmacologically beneficial ginsenosides governed by complex metabolic pathways. The cultivation of P. ginseng over an extend...
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Open AccessThe giant diploid faba genome unlocks variation in a global protein crop
Increasing the proportion of locally produced plant protein in currently meat-rich diets could substantially reduce greenhouse gas emissions and loss of biodiversity1. However, plant protein production is hampere...
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Open AccessAegilops sharonensis genome-assisted identification of stem rust resistance gene Sr62
The wild relatives and progenitors of wheat have been widely used as sources of disease resistance (R) genes. Molecular identification and characterization of these R genes facilitates their manipulation and trac...
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Protocol
The Barley and Wheat Pan-Genomes
To unlock the genetic potential in crops, multi-genome comparisons are an essential tool. Decreasing costs and improved sequencing technologies have democratized plant genome sequencing and led to a vast incre...
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Open AccessThe reinvention of potato
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Open AccessAuthor Correction: Mitochondrial plastid DNA can cause DNA barcoding paradox in plants
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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Chapter
Ginseng Genome Structure and Evolution
Ginseng (Panax ginseng) genome has been difficult to unlock its genomics due to its size, high repeat content, and polyploidy nature. Although chromosome-scale genome assembly for ginseng holds numerous challenge...
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Protocol
Mining of Miniature Transposable Elements in Brassica Species at BrassicaTED
Miniature form transposable elements (mTEs) are ubiquitous in plant genomes and directly linked to gene regulation and evolution. With the advantage of completely sequenced genomes of Brassica rapa and Brassica o...
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Chapter
Genomic Resources for Ginseng Genome Studies
Advances in sequencing technologies have enabled scientists to sequence both DNA and RNA molecules from ginseng (Panax ginseng) and its close relatives. These datasets include transcriptome of various tissues and...
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Open AccessThe barley pan-genome reveals the hidden legacy of mutation breeding
Genetic diversity is key to crop improvement. Owing to pervasive genomic structural variation, a single reference genome assembly cannot capture the full complement of sequence diversity of a crop species (kno...
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Open AccessMitochondrial plastid DNA can cause DNA barcoding paradox in plants
The transfer of ancestral plastid genomes into mitochondrial genomes to generate mitochondrial plastid DNA (MTPT) is known to occur in plants, but its impacts on mitochondrial genome complexity and the potenti...
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Article
Sweet genes in melon and watermelon
Two genetic studies uncover how domestication changed fruit quality traits in melon and watermelon. The studies combine population genomic and quantitative genetic tools to study crop evolution and provide bre...
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Article
Identification of consistent QTL with large effect on anther extrusion in doubled haploid populations developed from spring wheat accessions in German Federal ex situ Genebank
Novel large-effect consistent QTL for anther extrusion (AE) to improve cross-pollination were mapped in doubled haploid populations derived from IPK gene bank spring wheat accessions. TaAP2-D, an ortholog of Clei...
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Transcriptomes of Indian barnyard millet and barnyardgrass reveal putative genes involved in drought adaptation and micronutrient accumulation
Indian barnyard millet (Echinochloa frumentacea) is a rich source of dietary fiber, minerals and protein. The lack of genetic resources has slowed the discovery of genes involved in its nutrient accumulation and ...
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Article
Open AccessIdentification of candidate UDP-glycosyltransferases involved in protopanaxadiol-type ginsenoside biosynthesis in Panax ginseng
Ginsenosides are dammarane-type or triterpenoidal saponins that contribute to the various pharmacological activities of the medicinal herb Panax ginseng. The putative biosynthetic pathway for ginsenoside biosynth...
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Open AccessRapid and Efficient FISH using Pre-Labeled Oligomer Probes
Fluorescence in situ hybridization (FISH) is used to visualize the distribution of DNA elements within a genome. Conventional methods for FISH take 1–2 days. Here, we developed a simplified, rapid FISH technique ...
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Open AccessRe-exploration of U’s Triangle Brassica Species Based on Chloroplast Genomes and 45S nrDNA Sequences
The concept of U’s triangle, which revealed the importance of polyploidization in plant genome evolution, described natural allopolyploidization events in Brassica using three diploids [B. rapa (A genome), B. nig...
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Open AccessGinseng Genome Database: an open-access platform for genomics of Panax ginseng
The ginseng (Panax ginseng C.A. Meyer) is a perennial herbaceous plant that has been used in traditional oriental medicine for thousands of years. Ginsenosides, which have significant pharmacological effects on h...
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Article
Open AccessComplete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species
Cytoplasmic chloroplast (cp) genomes and nuclear ribosomal DNA (nR) are the primary sequences used to understand plant diversity and evolution. We introduce a high-throughput method to simultaneously obtain co...
