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    Article

    Mitochondrial ATP generation is more proteome efficient than glycolysis

    Metabolic efficiency profoundly influences organismal fitness. Nonphotosynthetic organisms, from yeast to mammals, derive usable energy primarily through glycolysis and respiration. Although respiration is mor...

    Yihui Shen, Hoang V. Dinh, Edward R. Cruz, Zihong Chen in Nature Chemical Biology (2024)

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    Article

    Evidence for widespread cytoplasmic structuring into mesoscale condensates

    Compartmentalization is an essential feature of eukaryotic life and is achieved both via membrane-bound organelles, such as mitochondria, and membrane-less biomolecular condensates, such as the nucleolus. Know...

    Felix C. Keber, Thao Nguyen, Andrea Mariossi, Clifford P. Brangwynne in Nature Cell Biology (2024)

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    Article

    Slow TCA flux and ATP production in primary solid tumours but not metastases

    Tissues derive ATP from two pathways—glycolysis and the tricarboxylic acid (TCA) cycle coupled to the electron transport chain. Most energy in mammals is produced via TCA metabolism1. In tumours, however, the abs...

    Caroline R. Bartman, Daniel R. Weilandt, Yihui Shen, Won Dong Lee, Yujiao Han in Nature (2023)

  4. Article

    Open Access

    Differential nuclear import sets the timing of protein access to the embryonic genome

    The development of a fertilized egg to an embryo requires the proper temporal control of gene expression. During cell differentiation, timing is often controlled via cascades of transcription factors (TFs). Ho...

    Thao Nguyen, Eli J. Costa, Tim Deibert, Jose Reyes, Felix C. Keber in Nature Communications (2022)

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    Article

    Activity-based RNA-modifying enzyme probing reveals DUS3L-mediated dihydrouridylation

    Epitranscriptomic RNA modifications can regulate RNA activity; however, there remains a major gap in our understanding of the RNA chemistry present in biological systems. Here we develop RNA-mediated activity-...

    Wei Dai, Ang Li, Nathan J. Yu, Thao Nguyen, Robert W. Leach in Nature Chemical Biology (2021)

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    Protocol

    Immunofluorescence of Microtubule Assemblies in Amphibian Oocytes and Early Embryos

    Amphibian oocytes and embryos are classical models to study cellular and developmental processes. For these studies, it is often advantageous to visualize protein organization. However, the large size and yolk...

    Thao Nguyen, Timothy J. Mitchison, Martin Wühr in Vertebrate Embryogenesis (2019)

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    Protocol

    Quantitative Proteomics for Xenopus Embryos II, Data Analysis

    The oocytes, embryos, and cell-free lysates of the frog Xenopus laevis have emerged as powerful models for quantitative proteomic experiments. In the accompanying paper (Chapter 13) we describe how to prepare sam...

    Matthew Sonnett, Meera Gupta, Thao Nguyen, Martin Wühr in Xenopus (2018)

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    Protocol

    Quantitative Proteomics of Xenopus Embryos I, Sample Preparation

    Xenopus oocytes and embryos are model systems optimally suited for quantitative proteomics. This is due to the availability of large amount of protein material and the ease of physical manipulation. Furthermore, ...

    Meera Gupta, Matthew Sonnett, Lillia Ryazanova, Marc Presler, Martin Wühr in Xenopus (2018)

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    Chapter

    Vertebrate Embryonic Cleavage Pattern Determination

    The pattern of the earliest cell divisions in a vertebrate embryo lays the groundwork for later developmental events such as gastrulation, organogenesis, and overall body plan establishment. Understanding thes...

    Andrew Hasley, Shawn Chavez, Michael Danilchik, Martin Wühr in Vertebrate Development (2017)

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    Chapter

    Asymmetries in Cell Division, Cell Size, and Furrowing in the Xenopus laevis Embryo

    Asymmetric cell divisions produce two daughter cells with distinct fate. During embryogenesis, this mechanism is fundamental to build tissues and organs because it generates cell diversity. In adults, it rema...

    Jean-Pierre Tassan, Martin Wühr in Asymmetric Cell Division in Development, D… (2017)

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    Article

    Essential CDK1-inhibitory role for separase during meiosis I in vertebrate oocytes

    Separase not only triggers anaphase of meiosis I by proteolytic cleavage of cohesin on chromosome arms, but in vitro vertebrate separase also acts as a direct inhibitor of cyclin-dependent kinase 1 (Cdk1) on libe...

    Ingo H. Gorr, Alexandra Reis, Dominik Boos, Martin WÜhr in Nature Cell Biology (2006)