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  1. Article

    Open Access

    Atypical teratoid/rhabdoid tumoroids reveal subgroup-specific drug vulnerabilities

    Atypical teratoid/rhabdoid tumors (ATRTs) represent a rare, but aggressive pediatric brain tumor entity. They are genetically defined by alterations in the SWI/SNF chromatin remodeling complex members SMARCB1 or

    Irene Paassen, Justin Williams, Carla Ríos Arceo, Femke Ringnalda in Oncogene (2023)

  2. No Access

    Article

    Functional patient-derived organoid screenings identify MCLA-158 as a therapeutic EGFR × LGR5 bispecific antibody with efficacy in epithelial tumors

    Patient-derived organoids (PDOs) recapitulate tumor architecture, contain cancer stem cells and have predictive value supporting personalized medicine. Here we describe a large-scale functional screen of dual-...

    Bram Herpers, Berina Eppink, Mark I. James, Carme Cortina in Nature Cancer (2022)

  3. No Access

    Article

    Ongoing chromosomal instability and karyotype evolution in human colorectal cancer organoids

    Chromosome segregation errors cause aneuploidy and genomic heterogeneity, which are hallmarks of cancer in humans. A persistent high frequency of these errors (chromosomal instability (CIN)) is predicted to pr...

    Ana C. F. Bolhaqueiro, Bas Ponsioen, Bjorn Bakker, Sjoerd J. Klaasen in Nature Genetics (2019)

  4. No Access

    Article

    Intra-tumour diversification in colorectal cancer at the single-cell level

    Every cancer originates from a single cell. During expansion of the neoplastic cell population, individual cells acquire genetic and phenotypic differences from each other. Here, to investigate the nature and ...

    Sophie F. Roerink, Nobuo Sasaki, Henry Lee-Six, Matthew D. Young in Nature (2018)

  5. Article

    Open Access

    FANTOM5 CAGE profiles of human and mouse samples

    In the FANTOM5 project, transcription initiation events across the human and mouse genomes were mapped at a single base-pair resolution and their frequencies were monitored by CAGE (Cap Analysis of Gene Expres...

    Shuhei Noguchi, Takahiro Arakawa, Shiro Fukuda, Masaaki Furuno in Scientific Data (2017)

  6. No Access

    Article

    Tissue-specific mutation accumulation in human adult stem cells during life

    Stem cells of the liver, colon and small intestine gradually accumulate mutations throughout life at a similar rate even though cancer incidence varies greatly among these tissues.

    Francis Blokzijl, Joep de Ligt, Myrthe Jager, Valentina Sasselli, Sophie Roerink in Nature (2016)

  7. No Access

    Article

    Sequential cancer mutations in cultured human intestinal stem cells

    Crypt stem cells represent the cells of origin for intestinal neoplasia. Both mouse and human intestinal stem cells can be cultured in medium containing the stem-cell-niche factors WNT, R-spondin, epidermal gr...

    Jarno Drost, Richard H. van Jaarsveld, Bas Ponsioen, Cheryl Zimberlin in Nature (2015)

  8. Article

    Open Access

    Transformation of intestinal stem cells into gastric stem cells on loss of transcription factor Cdx2

    The endodermal lining of the adult gastro-intestinal tract harbours stem cells that are responsible for the day-to-day regeneration of the epithelium. Stem cells residing in the pyloric glands of the stomach a...

    Salvatore Simmini, Monika Bialecka, Meritxell Huch, Lennart Kester in Nature Communications (2014)

  9. No Access

    Article

    Genome sequencing of normal cells reveals developmental lineages and mutational processes

    On the basis of whole-genome sequences of clonal lines derived from normal mouse tissues, variation in mutational patterns and load across different tissues are described and early embryonic cell divisions are...

    Sam Behjati, Meritxell Huch, Ruben van Boxtel, Wouter Karthaus, David C. Wedge in Nature (2014)

  10. Article

    Open Access

    DNA methylation dynamics during intestinal stem cell differentiation reveals enhancers driving gene expression in the villus

    DNA methylation is of pivotal importance during development. Previous genome-wide studies identified numerous differentially methylated regions upon differentiation of stem cells, many of them associated with ...

    Lucas TJ Kaaij, Marc van de Wetering, Fang Fang, Benjamin Decato in Genome Biology (2013)

  11. No Access

    Article

    In vitro expansion of single Lgr5+ liver stem cells induced by Wnt-driven regeneration

    A mouse model of liver damage has identified a population of Lrg5+ liver stem cells that can generate hepatoctyes and bile ducts in vivo.

    Meritxell Huch, Craig Dorrell, Sylvia F. Boj, Johan H. van Es, Vivian S. W. Li in Nature (2013)

  12. No Access

    Article

    Dll1+ secretory progenitor cells revert to stem cells upon crypt damage

    Notch signalling in the intestinal crypt is modulated to drive commitment to the secretory fate. Clevers and colleagues find that cells expressing the Notch ligand DLL1 are intermediate secretory cells that ca...

    Johan H. van Es, Toshiro Sato, Marc van de Wetering, Anna Lyubimova in Nature Cell Biology (2012)

  13. No Access

    Article

    Tumour suppressor RNF43 is a stem-cell E3 ligase that induces endocytosis of Wnt receptors

    In vivo and in vitro studies show that the stem-cell E3 ubiquitin ligases RNF43 and ZNRF3 act as tumour suppressors in colorectal cancer models, and are involved in the negative regulation of the cancer-associate...

    Bon-Kyoung Koo, Maureen Spit, Ingrid Jordens, Teck Y. Low, Daniel E. Stange in Nature (2012)

  14. No Access

    Article

    Lrig1 controls intestinal stem-cell homeostasis by negative regulation of ErbB signalling

    Lrig1, a transmembrane glycoprotein, has previously been shown to inhibit ErbB signalling. Jensen and colleagues show that Lrig1 controls the size of the intestinal stem-cell niche by modulating the amplitude ...

    Vivian W. Y. Wong, Daniel E. Stange, Mahalia E. Page, Simon Buczacki in Nature Cell Biology (2012)

  15. No Access

    Article

    Single-cell dissection of transcriptional heterogeneity in human colon tumors

    Not all cells in a tumor are alike, but our ability to characterize cancer heterogeneity in detail has been limited. Dalerba et al. use high-throughput single-cell expression analysis to define clinically relevan...

    Piero Dalerba, Tomer Kalisky, Debashis Sahoo, Pradeep S Rajendran in Nature Biotechnology (2011)

  16. No Access

    Article

    Lgr5 homologues associate with Wnt receptors and mediate R-spondin signalling

    The adult stem cell marker Lgr5 and its relative Lgr4 are often co-expressed in Wnt-driven proliferative compartments. We find that conditional deletion of both genes in the mouse gut impairs Wnt target gene e...

    Wim de Lau, Nick Barker, Teck Y. Low, Bon-Kyoung Koo, Vivian S. W. Li in Nature (2011)

  17. No Access

    Article

    Paneth cells constitute the niche for Lgr5 stem cells in intestinal crypts

    Paneth cells, specialized cells found in the intestinal epithelium, are known to protect stem cells by producing bactericidal compounds. Now another crucial function is reported: they provide the essential nic...

    Toshiro Sato, Johan H. van Es, Hugo J. Snippert, Daniel E. Stange in Nature (2011)

  18. No Access

    Article

    Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche

    Sato et al. present a method for establishing long-term culture conditions whereby single stem cells or single crypt structures isolated from intestinal crypts can generate organoids with all the differentiated c...

    Toshiro Sato, Robert G. Vries, Hugo J. Snippert, Marc van de Wetering in Nature (2009)

  19. No Access

    Article

    Crypt stem cells as the cells-of-origin of intestinal cancer

    Inappropriate activation of the Wnt signalling pathway in intestinal stem cells causes them to become cancerous. Two papers in this issue help identify the cell type at the root of this cancer, which should in...

    Nick Barker, Rachel A. Ridgway, Johan H. van Es, Marc van de Wetering in Nature (2009)

  20. No Access

    Article

    The Xenopus Wnt effector XTcf-3 interacts with Groucho-related transcriptional repressors

    Tcf/Lef transcription factors mediate signalling from Wingless/Wnt proteins by recruiting Armadillo/β-catenin as a transcriptional co-activator1,2,3,4,5,6,7. However, studies of Drosophila, Xenopus and Caenorhabd...

    Jeroen Roose, Miranda Molenaar, Josi Peterson, Jolanda Hurenkamp, Helen Brantjes in Nature (1998)

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