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  1. Article

    Open Access

    Crohn’s disease in endoscopic remission, obesity, and cases of high genetic risk demonstrate overlap** shifts in the colonic mucosal-luminal interface microbiome

    Crohn’s disease (CD) patients demonstrate distinct intestinal microbial compositions and metabolic characteristics compared to unaffected controls. However, the impact of inflammation and underlying genetic ri...

    Jonathan P. Jacobs, Maryam Goudarzi, Venu Lagishetty, Dalin Li in Genome Medicine (2022)

  2. Article

    Open Access

    HIV Infection is associated with compositional and functional shifts in the rectal mucosal microbiota

    Regardless of infection route, the intestine is the primary site for HIV-1 infection establishment and results in significant mucosal CD4+ T lymphocyte depletion, induces an inflammatory state that propagates ...

    Ian H McHardy, **aoxiao Li, Maomeng Tong, Paul Ruegger, Jonathan Jacobs in Microbiome (2013)

  3. Article

    Open Access

    Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships

    Consistent compositional shifts in the gut microbiota are observed in IBD and other chronic intestinal disorders and may contribute to pathogenesis. The identities of microbial biomolecular mechanisms and meta...

    Ian H McHardy, Maryam Goudarzi, Maomeng Tong, Paul M Ruegger, Emma Schwager in Microbiome (2013)