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  1. No Access

    Article

    Directed evolution of adenine base editors with increased activity and therapeutic application

    The foundational adenine base editors (for example, ABE7.10) enable programmable A•T to G•C point mutations but editing efficiencies can be low at challenging loci in primary human cells. Here we further evolv...

    Nicole M. Gaudelli, Dieter K. Lam, Holly A. Rees in Nature Biotechnology (2020)

  2. Article

    Open Access

    Cytosine base editors with minimized unguided DNA and RNA off-target events and high on-target activity

    Cytosine base editors (CBEs) enable efficient, programmable reversion of T•A to C•G point mutations in the human genome. Recently, cytosine base editors with rAPOBEC1 were reported to induce unguided cytosine ...

    Yi Yu, Thomas C. Leete, David A. Born, Lauren Young in Nature Communications (2020)

  3. No Access

    Article

    Design and applications of gene therapy vectors for mucopolysaccharidosis in Colombia

    The authors briefly describe their work in the construction of viral derived vectors for the use in gene therapy of muchopolysaccharide storage diseases (MPS), especially in Morquio A syndrome. The motivations...

    Carlos J. Alméciga-Diaz, Luis A. Barrera in Gene Therapy (2020)

  4. No Access

    Article

    Tailoring the AAV2 capsid vector for bone-targeting

    Targeting specific tissues remains a major challenge to the promise of gene therapy. For example, several strategies have failed to target adeno-associated virus 2 (AAV2) vectors, to bone. We have evaluated in...

    Carlos J. Alméciga-Díaz, Adriana M. Montaño, Luis A. Barrera in Pediatric Research (2018)

  5. Article

    Open Access

    Neural stem cells for disease modeling and evaluation of therapeutics for Tay-Sachs disease

    Tay-Sachs disease (TSD) is a rare neurodegenerative disorder caused by autosomal recessive mutations in the HEXA gene on chromosome 15 that encodes β-hexosaminidase. Deficiency in HEXA results in accumulation of ...

    Mylinh Vu, Rong Li, Amanda Baskfield, Billy Lu in Orphanet Journal of Rare Diseases (2018)

  6. Article

    Open Access

    Publisher Correction: Pairwise library screen systematically interrogates Staphylococcus aureus Cas9 specificity in human cells

    The original HTML version of this Article incorrectly listed an affiliation of Josh Tycko as ‘Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA’, instead of the correct ‘P...

    Josh Tycko, Luis A. Barrera, Nicholas C. Huston, Ari E. Friedland in Nature Communications (2018)

  7. Article

    Open Access

    Research, diagnosis and education in inborn errors of metabolism in Colombia: 20 years’ experience from a reference center

    The use of specialized centers has been the main alternative for an appropriate diagnosis, management and follow up of patients affected by inborn errors of metabolism (IEM). These centers facilitate the train...

    Olga Y. Echeverri, Johana M. Guevara in Orphanet Journal of Rare Diseases (2018)

  8. Article

    Open Access

    Pairwise library screen systematically interrogates Staphylococcus aureus Cas9 specificity in human cells

    Therapeutic genome editing with Staphylococcus aureus Cas9 (SaCas9) requires a rigorous understanding of its potential off-target activity in the human genome. Here we report a high-throughput screening approach ...

    Josh Tycko, Luis A. Barrera, Nicholas C. Huston, Ari E. Friedland in Nature Communications (2018)

  9. No Access

    Article

    Response to “Unexpected mutations after CRISPR–Cas9 editing in vivo

    Christopher J Wilson, Tim Fennell, Anne Bothmer, Morgan L Maeder in Nature Methods (2018)

  10. Article

    Open Access

    UDiTaS™, a genome editing detection method for indels and genome rearrangements

    Understanding the diversity of repair outcomes after introducing a genomic cut is essential for realizing the therapeutic potential of genomic editing technologies. Targeted PCR amplification combined with Nex...

    Georgia Giannoukos, Dawn M. Ciulla, Eugenio Marco, Hayat S. Abdulkerim in BMC Genomics (2018)

  11. Article

    Open Access

    Characterization of the interplay between DNA repair and CRISPR/Cas9-induced DNA lesions at an endogenous locus

    The CRISPR–Cas9 system provides a versatile toolkit for genome engineering that can introduce various DNA lesions at specific genomic locations. However, a better understanding of the nature of these lesions a...

    Anne Bothmer, Tanushree Phadke, Luis A. Barrera in Nature Communications (2017)

  12. Article

    Open Access

    CellMapper: rapid and accurate inference of gene expression in difficult-to-isolate cell types

    We present a sensitive approach to predict genes expressed selectively in specific cell types, by searching publicly available expression data for genes with a similar expression profile to known cell-specific...

    Bradlee D. Nelms, Levi Waldron, Luis A. Barrera, Andrew W. Weflen in Genome Biology (2016)

  13. Article

    Open Access

    Recombinant human N-acetylgalactosamine-6-sulfate sulfatase (GALNS) produced in the methylotrophic yeast Pichia pastoris

    Mucopolysaccharidosis IV A (MPS IV A, Morquio A disease) is a lysosomal storage disease (LSD) produced by mutations on N-acetylgalactosamine-6-sulfate sulfatase (GALNS). Recently an enzyme replacement therapy ...

    Alexander Rodríguez-López, Carlos J. Alméciga-Díaz in Scientific Reports (2016)

  14. Article

    Open Access

    Context influences on TALE–DNA binding revealed by quantitative profiling

    Transcription activator-like effector (TALE) proteins recognize DNA using a seemingly simple DNA-binding code, which makes them attractive for use in genome engineering technologies that require precise target...

    Julia M. Rogers, Luis A. Barrera, Deepak Reyon, Jeffry D. Sander in Nature Communications (2015)

  15. No Access

    Article

    Highly parallel assays of tissue-specific enhancers in whole Drosophila embryos

    Identifying tissue-specific expression of a selection marker and putative enhancer-driven expression of GFP with flow cytometry enriches for active enhancers.

    Stephen S Gisselbrecht, Luis A Barrera, Martin Porsch, Anton Aboukhalil in Nature Methods (2013)

  16. No Access

    Article

    Low-Scale expression and purification of an active putative iduronate 2-sulfate sulfatase-Like enzyme from Escherichia coli K12

    The sulfatase family involves a group of enzymes with a large degree of similarity. Until now, sixteen human sulfatases have been identified, most of them found in lysosomes. Human deficiency of sulfatases gen...

    Edwin David Morales-Álvarez, Claudia Marcela Rivera-Hoyos in Journal of Microbiology (2013)

  17. No Access

    Article

    Enzyme replacement therapy for Morquio A: an active recombinant N-acetylgalactosamine-6-sulfate sulfatase produced in Escherichia coli BL21

    Mucopolysaccharidosis IVA (MPS IVA) is an autosomal recessive disorder caused by N-acetylgalactosamine-6-sulfate sulfatase (GALNS) deficiency. Currently no effective therapies exist for MPS IVA. In this work, pro...

    Alexander Rodríguez, Ángela J. Espejo in Journal of Industrial Microbiology & Biote… (2010)

  18. No Access

    Chapter

    Ethical Aspects on Rare Diseases

    In this chapter we discuss several of the most relevant subjects related to ethics on Rare Diseases. Some general aspects are discussed such as the socio-psychological problems that confront the patients and t...

    Luis A. Barrera, Gilberto Cely Galindo B.Phil & Theo, MSc in Rare Diseases Epidemiology (2010)

  19. No Access

    Article

    Effect of elongation factor 1α promoter and SUMF1 over in vitro expression of N-acetylgalactosamine-6-sulfate sulfatase

    Morquio A is an autosomal recessive disease caused by the deficiency of N-acetylgalactosamine-6-sulfate sulfatase (GALNS), leading to the lysosomal accumulation of keratan-sulfate and chondroitin-6-sulfate. We ev...

    Carlos J. Alméciga-Díaz, Maria A. Rueda-Paramo in Molecular Biology Reports (2009)

  20. Article

    Identification of a common mutation in mucopolysaccharidosis IVA: correlation among genotype, phenotype, and keratan sulfate

    Mucopolysaccharidosis IVA (MPS IVA) is a lysosomal storage disorder caused by the deficiency of N-acetylgalactosamine-6-sulfate sulfatase (GALNS). Mutation screening of the GALNS was performed by genomic PCR and ...

    Shunji Tomatsu, Tatiana Dieter, Ida V. Schwartz in Journal of Human Genetics (2004)

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