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  1. Article

    Open Access

    Multiple PIK3CA mutation clonality correlates with outcomes in taselisib + fulvestrant-treated ER+/HER2–, PIK3CA-mutated breast cancers

    Mutations in the p110α catalytic subunit of phosphatidylinositol 3-kinase (PI3K), encoded by the PIK3CA gene, cause dysregulation of the PI3K pathway in 35–40% of patients with HR+/HER2– breast cancer. Preclinica...

    Katherine E. Hutchinson, Jessica W. Chen, Heidi M. Savage in Genome Medicine (2023)

  2. Article

    Open Access

    Multimodal immunogenomic biomarker analysis of tumors from pediatric patients enrolled to a phase 1-2 study of single-agent atezolizumab

    We report herein an exploratory biomarker analysis of refractory tumors collected from pediatric patients before atezolizumab therapy (iMATRIX-atezolizumab, NCT02541604

    Arash Nabbi, Arnavaz Danesh, Osvaldo Espin-Garcia, Stephanie Pedersen in Nature Cancer (2023)

  3. Article

    Open Access

    Cobimetinib in Pediatric and Young Adult Patients with Relapsed or Refractory Solid Tumors (iMATRIX-cobi): A Multicenter, Phase I/II Study

    The MAPK pathway is an emerging target across a number of adult and pediatric tumors. Targeting the downstream effector of MAPK, MEK1, is a proposed strategy to control the growth of MAPK-dependent tumors.

    Tanya Trippett, Helen Toledano, Quentin Campbell Hewson in Targeted Oncology (2022)

  4. Article

    Open Access

    CCNE1 amplification is associated with poor prognosis in patients with triple negative breast cancer

    Triple negative breast cancer (TNBC) is aggressive with limited treatment options upon recurrence. Molecular discordance between primary and metastatic TNBC has been observed, but the degree of biological hete...

    Zi-Ming Zhao, Susan E. Yost, Katherine E. Hutchinson, Sierra Min Li in BMC Cancer (2019)

  5. Article

    Open Access

    MSEA: detection and quantification of mutation hotspots through mutation set enrichment analysis

    Many cancer genes form mutation hotspots that disrupt their functional domains or active sites, leading to gain- or loss-of-function. We propose a mutation set enrichment analysis (MSEA) implemented by two nov...

    Peilin Jia, Quan Wang, Qingxia Chen, Katherine E Hutchinson, William Pao in Genome Biology (2014)

  6. No Access

    Article

    Chip** away at the lung cancer genome

    Kinase inhibitors are now standard treatment for patients with lung cancer whose tumors harbor specific mutant kinases. Four recent studies, including three in this issue (pages 375–384

    William Pao, Katherine E Hutchinson in Nature Medicine (2012)