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  1. Article

    Author Correction: A genomic mutational constraint map using variation in 76,156 human genomes

    Siwei Chen, Laurent C. Francioli, Julia K. Goodrich, Ryan L. Collins in Nature (2024)

  2. No Access

    Article

    Inferring compound heterozygosity from large-scale exome sequencing data

    Recessive diseases arise when both copies of a gene are impacted by a damaging genetic variant. When a patient carries two potentially causal variants in a gene, accurate diagnosis requires determining that th...

    Michael H. Guo, Laurent C. Francioli, Sarah L. Stenton in Nature Genetics (2024)

  3. No Access

    Article

    A genomic mutational constraint map using variation in 76,156 human genomes

    The depletion of disruptive variation caused by purifying natural selection (constraint) has been widely used to investigate protein-coding genes underlying human disorders14, but attempts to assess constraint f...

    Siwei Chen, Laurent C. Francioli, Julia K. Goodrich, Ryan L. Collins in Nature (2024)

  4. Article

    Open Access

    Determinants of penetrance and variable expressivity in monogenic metabolic conditions across 77,184 exomes

    Hundreds of thousands of genetic variants have been reported to cause severe monogenic diseases, but the probability that a variant carrier develops the disease (termed penetrance) is unknown for virtually all...

    Julia K. Goodrich, Moriel Singer-Berk, Rachel Son, Abigail Sveden in Nature Communications (2021)

  5. Article

    Author Correction: The effect of LRRK2 loss-of-function variants in humans

    A Correction to this paper has been published: https://doi.org/10.1038/s41591-020-01185-6.

    Nicola Whiffin, Irina M. Armean, Aaron Kleinman, Jamie L. Marshall in Nature Medicine (2021)

  6. Article

    Open Access

    The effect of LRRK2 loss-of-function variants in humans

    Human genetic variants predicted to cause loss-of-function of protein-coding genes (pLoF variants) provide natural in vivo models of human gene inactivation and can be valuable indicators of gene function and ...

    Nicola Whiffin, Irina M. Armean, Aaron Kleinman, Jamie L. Marshall in Nature Medicine (2020)

  7. Article

    Open Access

    ABO antigen and secretor statuses are not associated with gut microbiota composition in 1,500 twins

    Host genetics is one of several factors known to shape human gut microbiome composition, however, the physiological processes underlying the heritability are largely unknown. Inter-individual differences in ho...

    Emily R. Davenport, Julia K. Goodrich, Jordana T. Bell, Tim D. Spector in BMC Genomics (2016)

  8. Article

    Open Access

    Heritable components of the human fecal microbiome are associated with visceral fat

    Variation in the human fecal microbiota has previously been associated with body mass index (BMI). Although obesity is a global health burden, the accumulation of abdominal visceral fat is the specific cardio-...

    Michelle Beaumont, Julia K. Goodrich, Matthew A. Jackson, Idil Yet in Genome Biology (2016)

  9. Article

    Correction: Corrigendum: Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome

    Nature 519, 92–96 (2015); doi:10.1038/nature14232 Some clarifications are provided to this Letter; these do not alter any of the central conclusions but, rather, are provided in the interests of transparency a...

    Benoit Chassaing, Omry Koren, Julia K. Goodrich, Angela C. Poole in Nature (2016)

  10. Article

    Open Access

    Reduced diversity and altered composition of the gut microbiome in individuals with myalgic encephalomyelitis/chronic fatigue syndrome

    Gastrointestinal disturbances are among symptoms commonly reported by individuals diagnosed with myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS). However, whether ME/CFS is associated with an alter...

    Ludovic Giloteaux, Julia K. Goodrich, William A. Walters, Susan M. Levine in Microbiome (2016)

  11. Article

    Open Access

    Host genetic variation impacts microbiome composition across human body sites

    The composition of bacteria in and on the human body varies widely across human individuals, and has been associated with multiple health conditions. While microbial communities are influenced by environmental...

    Ran Blekhman, Julia K. Goodrich, Katherine Huang, Qi Sun, Robert Bukowski in Genome Biology (2015)

  12. No Access

    Article

    Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome

    Emulsifying agents, which are common food additives in the human diet, induce low-grade inflammation and obesity/metabolic syndrome in mice, suggesting that further investigation into the potential impact of d...

    Benoit Chassaing, Omry Koren, Julia K. Goodrich, Angela C. Poole in Nature (2015)

  13. No Access

    Article

    QIIME allows analysis of high-throughput community sequencing data

    J Gregory Caporaso, Justin Kuczynski, Jesse Stombaugh, Kyle Bittinger in Nature Methods (2010)