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  1. No Access

    Protocol

    Visualization of Glutamatergic Neurotransmission in Diverse Model Organisms with Genetically Encoded Indicators

    Glutamate is the principal excitatory neurotransmitter, and occasionally subserves inhibitory roles, in the vertebrate nervous system. Glutamatergic synapses are dense in the vertebrate brain, at ~1/μm3. Glutamat...

    Abhi Aggarwal, Joyce Chan, Amelia K. Waring in New Technologies for Glutamate Interaction (2024)

  2. Article

    Open Access

    Glutamate indicators with improved activation kinetics and localization for imaging synaptic transmission

    The fluorescent glutamate indicator iGluSnFR enables imaging of neurotransmission with genetic and molecular specificity. However, existing iGluSnFR variants exhibit low in vivo signal-to-noise ratios, saturat...

    Abhi Aggarwal, Rui Liu, Yang Chen, Amelia J. Ralowicz in Nature Methods (2023)

  3. Article

    Open Access

    The functional organization of excitatory synaptic input to place cells

    Hippocampal place cells contribute to mammalian spatial navigation and memory formation. Numerous models have been proposed to explain the location-specific firing of this cognitive representation, but the pat...

    Michael D. Adoff, Jason R. Climer, Heydar Davoudi in Nature Communications (2021)

  4. No Access

    Article

    jYCaMP: an optimized calcium indicator for two-photon imaging at fiber laser wavelengths

    Femtosecond lasers at fixed wavelengths above 1,000 nm are powerful, stable and inexpensive, making them promising sources for two-photon microscopy. Biosensors optimized for these wavelengths are needed for b...

    Manuel Alexander Mohr, Daniel Bushey, Abhi Aggarwal, Jonathan S. Marvin in Nature Methods (2020)

  5. Article

    Author Correction: Kilohertz frame-rate two-photon tomography

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    Abbas Kazemipour, Ondrej Novak, Daniel Flickinger, Jonathan S. Marvin in Nature Methods (2019)

  6. No Access

    Article

    A genetically encoded fluorescent sensor for in vivo imaging of GABA

    Current techniques for monitoring GABA (γ-aminobutyric acid), the primary inhibitory neurotransmitter in vertebrates, cannot follow transients in intact neural circuits. To develop a GABA sensor, we applied th...

    Jonathan S. Marvin, Yoshiteru Shimoda, Vincent Magloire, Marco Leite in Nature Methods (2019)

  7. No Access

    Article

    Kilohertz frame-rate two-photon tomography

    Point-scanning two-photon microscopy enables high-resolution imaging within scattering specimens such as the mammalian brain, but sequential acquisition of voxels fundamentally limits its speed. We developed a...

    Abbas Kazemipour, Ondrej Novak, Daniel Flickinger, Jonathan S. Marvin in Nature Methods (2019)

  8. No Access

    Article

    Direct wavefront sensing enables functional imaging of infragranular axons and spines

    We advance two-photon microscopy for near-diffraction-limited imaging up to 850 µm below the pia in awake mice. Our approach combines direct wavefront sensing of light from a guidestar (formed by descanned flu...

    Rui Liu, Zengyi Li, Jonathan S. Marvin, David Kleinfeld in Nature Methods (2019)

  9. Article

    Author Correction: Stability, affinity, and chromatic variants of the glutamate sensor iGluSnFR

    The version of this paper originally published cited a preprint version of ref. 12 instead of the published version (Proc. Natl. Acad. Sci. USA 115, 5594–5599; 2018), which was available before this Nature Method...

    Jonathan S. Marvin, Benjamin Scholl, Daniel E. Wilson, Kaspar Podgorski in Nature Methods (2019)

  10. Article

    Open Access

    Multiplex imaging relates quantal glutamate release to presynaptic Ca2+ homeostasis at multiple synapses in situ

    Information processing by brain circuits depends on Ca2+-dependent, stochastic release of the excitatory neurotransmitter glutamate. Whilst optical glutamate sensors have enabled detection of synaptic discharges,...

    Thomas P. Jensen, Kaiyu Zheng, Nicholas Cole, Jonathan S. Marvin in Nature Communications (2019)

  11. Article

    Open Access

    A genetically encoded single-wavelength sensor for imaging cytosolic and cell surface ATP

    Adenosine 5′ triphosphate (ATP) is a universal intracellular energy source and an evolutionarily ancient, ubiquitous extracellular signal in diverse species. Here, we report the generation and characterization...

    Mark A. Lobas, Rongkun Tao, Jun Nagai, Mira T. Kronschläger in Nature Communications (2019)

  12. Article

    Publisher Correction: Stability, affinity, and chromatic variants of the glutamate sensor iGluSnFR

    In the version of this paper originally published, important figure labels in Fig. 3d were not visible. An image layer present in the authors’ original figure that included two small dashed outlines and text l...

    Jonathan S. Marvin, Benjamin Scholl, Daniel E. Wilson, Kaspar Podgorski in Nature Methods (2019)

  13. No Access

    Article

    Stability, affinity, and chromatic variants of the glutamate sensor iGluSnFR

    Single-wavelength fluorescent reporters allow visualization of specific neurotransmitters with high spatial and temporal resolution. We report variants of intensity-based glutamate-sensing fluorescent reporter...

    Jonathan S. Marvin, Benjamin Scholl, Daniel E. Wilson, Kaspar Podgorski in Nature Methods (2018)

  14. No Access

    Article

    An optimized fluorescent probe for visualizing glutamate neurotransmission

    A single-wavelength genetically encoded sensor of extracellular glutamate is reported. The sensor—iGluSnFR—is bright and photostable under both one- and two-photon illumination and is shown to work for in vivo im...

    Jonathan S Marvin, Bart G Borghuis, Lin Tian, Joseph Cichon in Nature Methods (2013)

  15. No Access

    Protocol

    Engineering and Application of Genetically Encoded Calcium Indicators

    Genetically encoded fluorescent biosensors are useful tools for tracking target analytes in cells, tissues and living organisms. These probes are often chimeric proteins consisting of a recognition element (e....

    Jasper Akerboom, Lin Tian, Jonathan S. Marvin in Genetically Encoded Functional Indicators (2012)

  16. Article

    Recombinant approaches to IgG-like bispecific antibodies

    One of the major obstacles in the development of bispecific antibodies (BsAb) has been the difficulty of producing the materials in sufficient quality and quantity by traditional technologies, such as the hybr...

    Jonathan S Marvin, Zhen** Zhu in Acta Pharmacologica Sinica (2005)

  17. No Access

    Article

    Manipulation of ligand binding affinity by exploitation of conformational coupling

    Traditional approaches for increasing the affinity of a protein for its ligand focus on constructing improved surface complementarity in the complex by altering the protein binding site to better fit the ligan...

    Jonathan S. Marvin, Homme W. Hellinga in Nature Structural Biology (2001)