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  1. Article

    Open Access

    Implementation of different relationship estimate methodologies in breeding value prediction in kiwiberry (Actinidia arguta)

    In dioecious crops such as Actinidia arguta (kiwiberries), some of the main challenges when breeding for fruit characteristics are the selection of potential male parents and the long juvenile period. Currently, ...

    Daniel Mertten, Samantha Baldwin, Canhong H. Cheng, John McCallum in Molecular Breeding (2023)

  2. No Access

    Chapter

    Conclusion

    This chapter concludes the study via a synthesis of the chapters, reflections on the overall lessons learned from the study of emotion in Melville’s writing, and an extended discussion of implications for the ...

    John McCallum in Exploring Emotion in Reformation Scotland (2022)

  3. No Access

    Chapter

    Introduction

    This chapter introduces the aims and scope of the study. This includes discussion of emotions historiography and, in particular, the current state of thinking on the emotions of early modern British Protestant...

    John McCallum in Exploring Emotion in Reformation Scotland (2022)

  4. No Access

    Chapter

    Social Relationships

    This chapter explores Melville’s experience and representation of emotion in his interpersonal relationships. This is divided into three sections, exploring firstly various family relationships starting with h...

    John McCallum in Exploring Emotion in Reformation Scotland (2022)

  5. No Access

    Book

    Exploring Emotion in Reformation Scotland

    The Emotional Worlds of James Melville, 1556–1614

    John McCallum (2022)

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    Chapter

    Religious Experiences

    This chapter explores those parts of Melville’s emotional experience and expression which relate directly to religion. This is divided into two parts: the first part focuses on Melville’s personal faith and sp...

    John McCallum in Exploring Emotion in Reformation Scotland (2022)

  7. No Access

    Chapter

    Understandings of Emotion

    This chapter explores the representation of emotion in Melville’s writings holistically. This firstly involves analysis of his vocabulary for emotional expression, ranging from negative to positive emotion and...

    John McCallum in Exploring Emotion in Reformation Scotland (2022)

  8. Article

    Open Access

    A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants

    Most published genome sequences are drafts, and most are dominated by computational gene prediction. Draft genomes typically incorporate considerable sequence data that are not assigned to chromosomes, and pre...

    Sarah M. Pilkington, Ross Crowhurst, Elena Hilario, Simona Nardozza in BMC Genomics (2018)

  9. No Access

    Chapter

    Gene Family Evolution in Allium Species

    During evolution, plant genomes have undergone duplications, deletions and rearrangements resulting in a wide variation in genome size and number of gene family members between different species. The variation...

    Jiffinvir Khosa, Robyn Lee, John McCallum, Richard Macknight in The Allium Genomes (2018)

  10. No Access

    Chapter

    Molecular Map** of Genes and QTL: Progress to Date and Development of New Population Resources for NGS Genetics

    Ability to conduct molecular analyses in Allium species was previously limited by the power of available technologies to sample very large heterozygous genomes in a cost-effective manner. The emergence of third-g...

    John McCallum, Samantha Baldwin, Richard Macknight, Jiffinvir Khosa in The Allium Genomes (2018)

  11. No Access

    Article

    A DNA-based diagnostic for differentiating among New Zealand endemic Podocarpus

    Species of the genus Podocarpus are primarily found in the Southern Hemisphere. In New Zealand, there are four endemic species—Podocarpus acutifolius, Podocarpus nivalis, Podocarpus totara and Podocarpus cunningh...

    Christina W. Marshall, David Chagné, Oliver Deusch in Tree Genetics & Genomes (2015)

  12. No Access

    Article

    Genetic analyses of bolting in bulb onion (Allium cepa L.)

    We present the first evidence for a QTL conditioning an adaptive trait in bulb onion, and the first linkage and population genetics analyses of candidate genes involved in photoperiod and verna...

    Samantha Baldwin, Roopashree Revanna in Theoretical and Applied Genetics (2014)

  13. No Access

    Article

    FLOWERING LOCUS T genes control onion bulb formation and flowering

    Onion (Allium cepa L.) is a biennial crop that in temperate regions is planted in the spring and, after a juvenile stage, forms a bulb in response to the lengthening photoperiod of late spring/summer. The bulb th...

    Robyn Lee, Samantha Baldwin, Fernand Kenel, John McCallum in Nature Communications (2013)

  14. No Access

    Article

    Development of robust genomic simple sequence repeat markers for estimation of genetic diversity within and among bulb onion (Allium cepa L.) populations

    Improved understanding of genetic diversity in onion and shallot (Allium cepa L.) is required to inform breeding and genetic resource conservation, and to enable development of association genetics and seed quali...

    Samantha Baldwin, Meeghan Pither-Joyce, Kathryn Wright, Leshi Chen in Molecular Breeding (2012)

  15. Article

    Open Access

    AlliumMap-A comparative genomics resource for cultivated Allium vegetables

    Vegetables of the genus Allium are widely consumed but remain poorly understood genetically. Genetic map** has been conducted in intraspecific crosses of onion (Allium cepa L.), A. fistulosum and interspecific ...

    John McCallum, Samantha Baldwin, Masayoshi Shigyo, Yanbo Deng in BMC Genomics (2012)

  16. No Access

    Chapter and Conference Paper

    Designing a Framework for End User Applications

    Specialised end user developed database applications can often be designed and developed quickly and simply to meet specific needs. However these applications are often difficult to generalise or adapt when re...

    Yanbo Deng, Clare Churcher, Walt Abell, John McCallum in End-User Development (2011)

  17. No Access

    Article

    Symptomatic hip plica: MR arthrographic and arthroscopic correlation

    Two cases of unilateral hip pain are reported in which MR arthrography demonstrated a prominent band medial to the ligamentum teres, running in the AP direction, consistent with a hip plica. Both patients unde...

    Lee D. Katz, Andrew Haims, Michael Medvecky, John McCallum in Skeletal Radiology (2010)

  18. No Access

    Article

    Pilot sequencing of onion genomic DNA reveals fragments of transposable elements, low gene densities, and significant gene enrichment after methyl filtration

    Sequencing of the onion (Allium cepa) genome is challenging because it has one of the largest nuclear genomes among cultivated plants. We undertook pilot sequencing of onion genomic DNA to estimate gene densities...

    Jernej Jakše, Jenelle D. F. Meyer, Go Suzuki in Molecular Genetics and Genomics (2008)

  19. No Access

    Article

    Genetic map** of sulfur assimilation genes reveals a QTL for onion bulb pungency

    Onion exhibits wide genetic and environmental variation in bioactive organosulfur compounds that impart pungency and health benefits. A PCR-based molecular marker map that included candidate genes for sulfur a...

    John McCallum, Meeghan Pither-Joyce, Martin Shaw in Theoretical and Applied Genetics (2007)

  20. No Access

    Chapter

    Onion

    John McCallum in Vegetables (2007)

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