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  1. Protocol

    Main Existing Datasets for Open Brain Research on Humans

    Recent advances in technology have made possible to quantify fine-grained individual differences at many levels, such as genetic, genomics, organ level, behavior, and clinical. The wealth of data becoming avai...

    Baptiste Couvy-Duchesne, Simona Bottani in Machine Learning for Brain Disorders (2023)

  2. Article

    Open Access

    Impact of BMI and waist circumference on epigenome-wide DNA methylation and identification of epigenetic biomarkers in blood: an EWAS in multi-ethnic Asian individuals

    The prevalence of obesity and its related chronic diseases have been increasing especially in Asian countries. Obesity-related genetic variants have been identified, but these explain little of the variation i...

    Yuqing Chen, Irfahan Kassam, Suk Hiang Lau, Jaspal S. Kooner in Clinical Epigenetics (2021)

  3. Article

    Open Access

    Analysis of DNA methylation associates the cystine–glutamate antiporter SLC7A11 with risk of Parkinson’s disease

    An improved understanding of etiological mechanisms in Parkinson’s disease (PD) is urgently needed because the number of affected individuals is projected to increase rapidly as populations age. We present res...

    Costanza L. Vallerga, Futao Zhang, Javed Fowdar, Allan F. McRae in Nature Communications (2020)

  4. Article

    Open Access

    The effect of X-linked dosage compensation on complex trait variation

    Quantitative genetics theory predicts that X-chromosome dosage compensation (DC) will have a detectable effect on the amount of genetic and therefore phenotypic trait variances at associated loci in males and ...

    Julia Sidorenko, Irfahan Kassam, Kathryn E. Kemper, Jian Zeng in Nature Communications (2019)

  5. Article

    Open Access

    Blood triglyceride levels are associated with DNA methylation at the serine metabolism gene PHGDH

    Efficient interventions to reduce blood triglycerides are few; newer and more tolerable intervention targets are needed. Understanding the molecular mechanisms underlying blood triglyceride levels variation is...

    Vinh Truong, Siying Huang, Jessica Dennis, Mathieu Lemire in Scientific Reports (2017)

  6. Article

    Open Access

    Autosomal genetic control of human gene expression does not differ across the sexes

    Despite their nearly identical genomes, males and females differ in risk, incidence, prevalence, severity and age-at-onset of many diseases. Sexual dimorphism is also seen in human autosomal gene expression, a...

    Irfahan Kassam, Luke Lloyd-Jones, Alexander Holloway, Kerrin S. Small in Genome Biology (2016)

  7. Article

    Open Access

    The autosomal genetic control of sexually dimorphic traits in humans is largely the same across the sexes

    There are substantial phenotypic differences between the male and female human. Several complex traits have recently been tested to see whether these phenotypic differences are explained by differences in gene...

    Irfahan Kassam, Allan F. McRae in Genome Biology (2016)

  8. Article

    Open Access

    Long-range epigenetic regulation is conferred by genetic variation located at thousands of independent loci

    The interplay between genetic and epigenetic variation is only partially understood. One form of epigenetic variation is methylation at CpG sites, which can be measured as methylation quantitative trait loci (...

    Mathieu Lemire, Syed H.E. Zaidi, Maria Ban, Bing Ge, Dylan Aïssi in Nature Communications (2015)