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  1. No Access

    Article

    Association between PDCD6-VNTR polymorphism and urinary cancer susceptibility

    Programmed cell death 6 (PDCD6) is known to be involved in apoptosis and tumorigenesis. Given the reported association with urinary cancer susceptibility through SNP analysis, we further analyzed the entire genom...

    Gi-Eun Yang, Min-Hye Kim, Mi-So Jeong, Sang-Yeop Lee, Yung Hyun Choi in Genes & Genomics (2024)

  2. Article

    Open Access

    Integrative analysis of spatial and single-cell transcriptome data from human pancreatic cancer reveals an intermediate cancer cell population associated with poor prognosis

    Recent studies using single-cell transcriptomic analysis have reported several distinct clusters of neoplastic epithelial cells and cancer-associated fibroblasts in the pancreatic cancer tumor microenvironment...

    Seongryong Kim, Galam Leem, Junjeong Choi, Yongjun Koh, Suho Lee in Genome Medicine (2024)

  3. Article

    Open Access

    Clinical manifestation, economic burden, and mortality in patients with transthyretin cardiac amyloidosis

    Transthyretin cardiac amyloidosis, also known as transthyretin cardiomyopathy (ATTR-CM) is a poorly-recognized disease with delayed diagnosis and poor prognosis. This nationwide population-based study aimed to...

    Suk-Chan Jang, ** Hyun Nam, Seung-Ah Lee, Dasom An in Orphanet Journal of Rare Diseases (2022)

  4. Article

    Open Access

    Amplification of LTRs of extrachromosomal linear DNAs (ALE-seq) identifies two active Oryco LTR retrotransposons in the rice cultivar Dong**

    Long terminal repeat retrotransposons (LTR-RTs) make up a considerable portion of plant genomes. New insertions of these active LTR-RTs modify gene structures and functions and play an important role in genome...

    Hyun** Koo, Soomin Kim, Hyun-Seung Park, Sang-Ji Lee, Nam-Chon Paek in Mobile DNA (2022)

  5. Article

    Open Access

    A novel HSP90 inhibitor SL-145 suppresses metastatic triple-negative breast cancer without triggering the heat shock response

    Despite recent advances, there remains a significant unmet need for the development of new targeted therapies for triple-negative breast cancer (TNBC). Although the heat shock protein HSP90 is a promising targ...

    Ji Young Kim, Tae-Min Cho, Jung Min Park, Soeun Park, Minsu Park, Kee Dal Nam in Oncogene (2022)

  6. No Access

    Article

    Efficacy of reduced-size short tandem repeat PCR analysis for degraded DNA samples

    Short tandem repeats (STR) ty** is an essential analysis method for human identification in forensic field. When DNAs obtained from the field as evidences are severely degraded or in too small amounts, STR a...

    Jeongyong Kim, Hyojeong Kim, Youn-Hyoung Nam, Ja Hyun Lee, Hyo Sook Kim in Genes & Genomics (2021)

  7. Article

    Open Access

    VNTR polymorphism in the breakpoint region of ABL1 and susceptibility to bladder cancer

    ABL1 is primarily known as a leukemia-related oncogene due to translocation, but about 2.2% of ABL1 mutations have been identified in bladder cancer, and high expression in solid cancer has also been detected.

    Min-Hye Kim, Gi-Eun Yang, Mi-So Jeong, Jeong-Yeon Mun in BMC Medical Genomics (2021)

  8. No Access

    Article

    CCL8 mediates crosstalk between endothelial colony forming cells and triple-negative breast cancer cells through IL-8, aggravating invasion and tumorigenicity

    Triple-negative breast cancer (TNBC) is an aggressive type of breast cancer with a poor prognosis for which no effective therapeutic measures are currently available. The present study aimed to investigate whe...

    Eun-Sook Kim, Su-Min Nam, Hye Kyung Song, Seungeun Lee, Kyoungmee Kim in Oncogene (2021)

  9. Article

    Open Access

    LONP1 and ClpP cooperatively regulate mitochondrial proteostasis for cancer cell survival

    Mitochondrial proteases are key components in mitochondrial stress responses that maintain proteostasis and mitochondrial integrity in harsh environmental conditions, which leads to the acquisition of aggressi...

    Yu Geon Lee, Hui Won Kim, Yeji Nam, Kyeong ** Shin, Yu ** Lee in Oncogenesis (2021)

  10. No Access

    Article

    Transcriptome profiling of olive flounder responses under acute and chronic heat stress

    The olive flounder (Paralichthys olivaceus) is a saltwater fish, which is valuable to the economy. The olive flounder strives to adapt to environmental stressors through physiological, biochemical, and transcript...

    Woo-** Kim, Kyubin Lee, Dain Lee, Hyun-Chul Kim, Bo-Hye Nam in Genes & Genomics (2021)

  11. No Access

    Article

    Differential manifestation of ocular phenotypes in TALEN-mediated p19arf knockout FVB/N and C57BL/6J mouse lines

    p19arf, primarily known as a tumor suppressor, has also been reported to play an essential role in normal development of mouse eyes. Consistently, lack of p19arf has been associated with ocular defects, but the m...

    **-Sung Park, Joo-Il Kim, Hyun-** Lim, Soo-Kyung Ryu, Euna Kwon in Genes & Genomics (2020)

  12. Article

    Open Access

    Pharmacogenomic analysis of patient-derived tumor cells in gynecologic cancers

    Gynecologic malignancy is one of the leading causes of mortality in female adults worldwide. Comprehensive genomic analysis has revealed a list of molecular aberrations that are essential to tumorigenesis, pro...

    Jason K. Sa, Jae Ryoung Hwang, Young-Jae Cho, Ji-Yoon Ryu, Jung-Joo Choi in Genome Biology (2019)

  13. Article

    Open Access

    Promotion of tumor progression and cancer stemness by MUC15 in thyroid cancer via the GPCR/ERK and integrin-FAK signaling pathways

    Thyroid cancer is the fifth most common cancer diagnosed in women worldwide. Notwithstanding advancements in the prognosis and treatment of thyroid cancer, 10–20% of thyroid cancer patients develops chemothera...

    Cheolwon Choi, Nguyen Thi Thao Tran, Trinh Van Ngu, Sae Woong Park in Oncogenesis (2018)

  14. No Access

    Article

    Astrocyte-derived CCL20 reinforces HIF-1-mediated hypoxic responses in glioblastoma by stimulating the CCR6-NF-κB signaling pathway

    During tumor development, stromal cells are co-opted to the tumor milieu and provide favorable conditions for the tumor. Hypoxia stimulates cancer cells to acquire a more malignant phenotype via activation of ...

    Peng **, Seung-Hyun Shin, Yang-Sook Chun, Hyun-Woo Shin, Yong Jae Shin in Oncogene (2018)

  15. Article

    Open Access

    Feasibility of quantifying SDC2 methylation in stool DNA for early detection of colorectal cancer

    Colorectal cancer (CRC) screening is the most efficient strategy to reduce disease-related mortality. Frequent aberrant DNA methylation is known to occur in selected genes and early during CRC development, whi...

    Tae Jeong Oh, Hyun Il Oh, Yang Yei Seo, Dongjun Jeong, Chang** Kim in Clinical Epigenetics (2017)

  16. No Access

    Article

    Comparative evaluation of 16S rRNA gene in world-wide strains of Streptococcus iniae and Streptococcus parauberis for early diagnostic marker

    Two bacterial etiological agents of the disease, Streptococcus iniae and Streptococcus parauberis has been associated with fish mortalities and heavy economic loss in all over the world. Bacterial identification ...

    Anshuman Mishra, Gyu-Hwi Nam, Jeong-An Gim, Minji Seong, Yunjeong Choe in Genes & Genomics (2017)

  17. Article

    Open Access

    Sequence variations of the EGR4 gene in Korean men with spermatogenesis impairment

    Egr4 is expressed in primary and secondary spermatocytes in adult mouse testes and has a crucial role in regulating germ cell maturation. The functional loss of Egr4 blocks spermatogen...

    Se Ra Sung, Seung Hun Song, Kyung Min Kang, Ji Eun Park in BMC Medical Genetics (2017)

  18. Article

    Erratum to: Effect of irradiation on cytokine secretion and nitric oxide production by inflammatory macrophages

    Sangwook Lim, Eun-Ji Ko, Yun-Jeong Kang, Kyung-Wan Baek, Mee Sun Ock in Genes & Genomics (2016)

  19. No Access

    Article

    Effect of irradiation on cytokine secretion and nitric oxide production by inflammatory macrophages

    This study explored the effects of low-dose and high-dose irradiation on inflammatory macrophage cells, specifically inflammatory cytokine secretion and nitric oxide (NO) production after irradiation. To eluci...

    Sangwook Lim, Eun-Ji Ko, Yun-Jeong Kang, Kyung-Wan Baek, Mee Sun Ock in Genes & Genomics (2016)

  20. No Access

    Article

    Status of dosage compensation of X chromosome in bovine genome

    Dosage compensation system with X chromosome upregulation and inactivation have evolved to overcome the genetic imbalance between sex chromosomes in both male and female of mammals. Although recent development...

    Sojeong Ka, Hyeonju Ahn, Minseok Seo, Heebal Kim, ** Nam Kim, Hyun-Jeong Lee in Genetica (2016)

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