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  1. Article

    Open Access

    Thousands of Qatari genomes inform human migration history and improve imputation of Arab haplotypes

    Arab populations are largely understudied, notably their genetic structure and history. Here we present an in-depth analysis of 6,218 whole genomes from Qatar, revealing extensive diversity as well as genetic ...

    Rozaimi Mohamad Razali, Juan Rodriguez-Flores in Nature Communications (2021)

  2. No Access

    Article

    Reprogramming roadmap reveals route to human induced trophoblast stem cells

    The reprogramming of human somatic cells to primed or naive induced pluripotent stem cells recapitulates the stages of early embryonic development16. The molecular mechanism that underpins these reprogramming pr...

    **aodong Liu, John F. Ouyang, Fernando J. Rossello, Jia ** Tan in Nature (2020)

  3. Article

    Open Access

    A urinary microRNA signature can predict the presence of bladder urothelial carcinoma in patients undergoing surveillance

    The objective of this study was to determine whether microRNA (miRNA) profiling of urine could identify the presence of urothelial carcinoma of the bladder (UCB) and to compare its performance characteristics ...

    Nikhil Sapre, Geoff Macintyre, Michael Clarkson, Haroon Naeem in British Journal of Cancer (2016)

  4. Article

    Open Access

    Tracking the origins and drivers of subclonal metastatic expansion in prostate cancer

    Tumour heterogeneity in primary prostate cancer is a well-established phenomenon. However, how the subclonal diversity of tumours changes during metastasis and progression to lethality is poorly understood. He...

    Matthew K.H. Hong, Geoff Macintyre, David C. Wedge, Peter Van Loo in Nature Communications (2015)

  5. Article

    Open Access

    Reducing the risk of false discovery enabling identification of biologically significant genome-wide methylation status using the HumanMethylation450 array

    The Illumina HumanMethylation450 BeadChip (HM450K) measures the DNA methylation of 485,512 CpGs in the human genome. The technology relies on hybridization of genomic fragments to probes on the chip. However, ...

    Haroon Naeem, Nicholas C Wong, Zac Chatterton, Matthew K H Hong in BMC Genomics (2014)

  6. No Access

    Reference Work Entry In depth

    Non-coding RNA Databases

    Dr. Orland Gonzalez, Haroon Naeem in Encyclopedia of Systems Biology (2013)

  7. Article

    Open Access

    miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature

    MicroRNAs have been discovered as important regulators of gene expression. To identify the target genes of microRNAs, several databases and prediction algorithms have been developed. Only few experimentally co...

    Haroon Naeem, Robert Küffner, Gergely Csaba, Ralf Zimmer in BMC Bioinformatics (2010)