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  1. Article

    Open Access

    Epigenetic and transcriptomic reprogramming in monocytes of severe COVID-19 patients reflects alterations in myeloid differentiation and the influence of inflammatory cytokines

    COVID-19 manifests with a wide spectrum of clinical phenotypes, ranging from asymptomatic and mild to severe and critical. Severe and critical COVID-19 patients are characterized by marked changes in the myelo...

    Gerard Godoy-Tena, Anis Barmada, Octavio Morante-Palacios in Genome Medicine (2022)

  2. Article

    Open Access

    Epigenomics and transcriptomics of systemic sclerosis CD4+ T cells reveal long-range dysregulation of key inflammatory pathways mediated by disease-associated susceptibility loci

    Systemic sclerosis (SSc) is a genetically complex autoimmune disease mediated by the interplay between genetic and epigenetic factors in a multitude of immune cells, with CD4+ T lymphocytes as one of the princ...

    Tianlu Li, Lourdes Ortiz-Fernández, Eduardo Andrés-León, Laura Ciudad in Genome Medicine (2020)

  3. Article

    Open Access

    Inflammatory cytokines and organ dysfunction associate with the aberrant DNA methylome of monocytes in sepsis

    Sepsis, a life-threatening organ dysfunction caused by a dysregulated systemic immune response to infection, associates with reduced responsiveness to subsequent infections. How such tolerance is acquired is n...

    Clara Lorente-Sorolla, Antonio Garcia-Gomez, Francesc Català-Moll in Genome Medicine (2019)

  4. No Access

    Chapter

    Examining DNA–Protein Interactions with Genome-Wide Chromatin Immunoprecipitation Analysis

    Understanding the mechanisms by which genomic information is hierarchically organized and used by different cell and tissue types under different physiological conditions requires the detailed analysis of the ...

    Esteban Ballestar, Manel Esteller in Modern Molecular Biology (2010)

  5. No Access

    Article

    A truncating mutation of HDAC2 in human cancers confers resistance to histone deacetylase inhibition

    Disruption of histone acetylation patterns is a common feature of cancer cells, but very little is known about its genetic basis. We have identified truncating mutations in one of the primary human histone dea...

    Santiago Ropero, Mario F Fraga, Esteban Ballestar, Richard Hamelin in Nature Genetics (2006)

  6. No Access

    Article

    Loss of acetylation at Lys16 and trimethylation at Lys20 of histone H4 is a common hallmark of human cancer

    CpG island hypermethylation and global genomic hypomethylation are common epigenetic features of cancer cells. Less attention has been focused on histone modifications in cancer cells. We characterized post-tr...

    Mario F Fraga, Esteban Ballestar, Ana Villar-Garea, Manuel Boix-Chornet in Nature Genetics (2005)

  7. No Access

    Article

    Mi-2 complex couples DNA methylation to chromatin remodelling and histone deacetylation

    Methylation of DNA at the dinucleotide CpG is essential for mammalian development and is correlated with stable transcriptional silencing1,2,3. This transcriptional silencing has recently been linked at a molecul...

    Paul A. Wade, Anne Gegonne, Peter L. Jones, Esteban Ballestar in Nature Genetics (1999)