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  1. No Access

    Article

    Optimization of base editors for the functional correction of SMN2 as a treatment for spinal muscular atrophy

    Spinal muscular atrophy (SMA) is caused by mutations in SMN1. SMN2 is a paralogous gene with a C•G-to-T•A transition in exon 7, which causes this exon to be skipped in most SMN2 transcripts, and results in low le...

    Christiano R. R. Alves, Leillani L. Ha, Rebecca Yaworski in Nature Biomedical Engineering (2024)

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    Article

    Potent and uniform fetal hemoglobin induction via base editing

    Inducing fetal hemoglobin (HbF) in red blood cells can alleviate β-thalassemia and sickle cell disease. We compared five strategies in CD34+ hematopoietic stem and progenitor cells, using either Cas9 nuclease or ...

    Thiyagaraj Mayuranathan, Gregory A. Newby, Ruopeng Feng, Yu Yao in Nature Genetics (2023)

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    Article

    In vivo engineered B cells secrete high titers of broadly neutralizing anti-HIV antibodies in mice

    Transplantation of B cells engineered ex vivo to secrete broadly neutralizing antibodies (bNAbs) has shown efficacy in disease models. However, clinical translation of this approach would require specialized m...

    Alessio D. Nahmad, Cicera R. Lazzarotto, Natalie Zelikson in Nature Biotechnology (2022)

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    Article

    Defining genome-wide CRISPR–Cas genome-editing nuclease activity with GUIDE-seq

    Genome-wide unbiased identification of double-stranded breaks enabled by sequencing (GUIDE-seq) is a sensitive, unbiased, genome-wide method for defining the activity of genome-editing nucleases in living cell...

    Nikolay L. Malinin, GaHyun Lee, Cicera R. Lazzarotto, Yichao Li in Nature Protocols (2021)

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    Article

    Base editing of haematopoietic stem cells rescues sickle cell disease in mice

    Sickle cell disease (SCD) is caused by a mutation in the β-globin gene HBB1. We used a custom adenine base editor (ABE8e-NRCH)2,3 to convert the SCD allele (HBBS) into Makassar β-globin (HBBG), a non-pathogenic v...

    Gregory A. Newby, Jonathan S. Yen, Kaitly J. Woodard, Thiyagaraj Mayuranathan in Nature (2021)

  6. Article

    Open Access

    Prime editing in mice reveals the essentiality of a single base in driving tissue-specific gene expression

    Most single nucleotide variants (SNVs) occur in noncoding sequence where millions of transcription factor binding sites (TFBS) reside. Here, a comparative analysis of CRISPR-mediated homology-directed repair (...

    Pan Gao, Qing Lyu, Amr R. Ghanam, Cicera R. Lazzarotto, Gregory A. Newby in Genome Biology (2021)

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    Article

    CHANGE-seq reveals genetic and epigenetic effects on CRISPR–Cas9 genome-wide activity

    Current methods can illuminate the genome-wide activity of CRISPR–Cas9 nucleases, but are not easily scalable to the throughput needed to fully understand the principles that govern Cas9 specificity. Here we d...

    Cicera R. Lazzarotto, Nikolay L. Malinin, Yichao Li, Ruochi Zhang in Nature Biotechnology (2020)

  8. Article

    Open Access

    Efficient correction of a deleterious point mutation in primary horse fibroblasts with CRISPR-Cas9

    Phenotypic selection during animal domestication has resulted in unwanted incorporation of deleterious mutations. In horses, the autosomal recessive condition known as Glycogen Branching Enzyme Deficiency (GBE...

    Carlos Pinzon-Arteaga, Matthew D. Snyder, Cicera R. Lazzarotto in Scientific Reports (2020)

  9. No Access

    Article

    Highly efficient therapeutic gene editing of human hematopoietic stem cells

    Re-expression of the paralogous γ-globin genes (HBG1/2) could be a universal strategy to ameliorate the severe β-globin disorders sickle cell disease (SCD) and β-thalassemia by induction of fetal hemoglobin (HbF,...

    Yuxuan Wu, **g Zeng, Benjamin P. Roscoe, Pengpeng Liu, Qiuming Yao in Nature Medicine (2019)

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    Article

    Defining CRISPR–Cas9 genome-wide nuclease activities with CIRCLE-seq

    Circularization for in vitro reporting of cleavage effects by sequencing (CIRCLE-seq) is a sensitive and unbiased method for defining the genome-wide activity (on-target and off-target) of CRISPR–Cas9 nuclease...

    Cicera R. Lazzarotto, Nhu T. Nguyen, **ng Tang, Jose Malagon-Lopez in Nature Protocols (2018)