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  1. Article

    Open Access

    Chromosome-level assembly of the synthetic hexaploid wheat-derived cultivar Chuanmai 104

    Synthetic hexaploid wheats (SHWs) are effective genetic resources for transferring agronomically important genes from wild relatives to common wheat (Triticum aestivum L.). Dozens of reference-quality pseudomolec...

    Zehou Liu, Fan Yang, Cao Deng, Hongshen Wan, Hao Tang, Junyan Feng in Scientific Data (2024)

  2. Article

    Open Access

    Polyploidization of Indotyphlops braminus: evidence from isoform-sequencing

    Indotyphlops braminus, the only known triploid parthenogenetic snake, is a compelling species for revealing the mechanism of polyploid emergence in vertebrates.

    Fei Zhu, **g Lu, Ke Sun, Cao Deng, Yu Xu in BMC Genomic Data (2024)

  3. No Access

    Article

    Computational identification and systematic classification of cytochrome P450 genes in Pogostemon cablin provide insights into flavonoids biosynthesis

    Patchouli (Pogostemon cablin (Blanco) Benth.) is a plant from the Lamiaceae family. Sesquiterpene hydrocarbons make up the majority of the patchouli oil’s > 40 primary constituents, which are found in its essenti...

    Junjun Li, Cao Deng, Mengjia Liu, Yang He in Acta Physiologiae Plantarum (2023)

  4. Article

    Open Access

    Reference genome assemblies reveal the origin and evolution of allohexaploid oat

    Common oat (Avena sativa) is an important cereal crop serving as a valuable source of forage and human food. Although reference genomes of many important crops have been generated, such work in oat has lagged beh...

    Yuanying Peng, Honghai Yan, Laichun Guo, Cao Deng, Chunlong Wang in Nature Genetics (2022)

  5. No Access

    Article

    Genome-wide signatures of mammalian skin covering evolution

    Animal body coverings provide protection and allow for adaptation to environmental pressures such as heat, ultraviolet radiation, water loss, and mechanical forces. Here, using a comparative genomics analysis ...

    Peng Cao, Qinlong Dai, Cao Deng, **ang Zhao, Shishan Qin in Science China Life Sciences (2021)

  6. No Access

    Article

    RNA-binding protein Hfq plays a vital role in cellulose decomposition throughout affecting cellulase gene expression

    To study the function of the RNA-binding protein Hfq in Bacillus subtilis cellulose decomposition.

    **ngtao Yang, Mengyao Dong, Ziyao Zhou, Lei Deng, Cao Deng in Biotechnology Letters (2021)

  7. No Access

    Article

    Rutile nanoparticles in anatase TiO2 thin films to improve their water splitting performance

    Rational design and fabrication of phase junction is an important way and strategy to enhance the photocatalytic performance. In this paper, rutile/anatase phase junction is obtained in rutile nanoparticles de...

    Rui** Hong, Cao Deng, Ming **g, **gqi Shi in Journal of Nanoparticle Research (2019)

  8. Article

    Open Access

    Building an octaploid genome and transcriptome of the medicinal plant Pogostemon cablin from Lamiales

    The Lamiales order presents highly varied genome sizes and highly specialized life strategies. Patchouli, Pogostemon cablin (Blanco) Benth. from the Lamiales, has been widely cultivated in tropical and subtropica...

    Yang He, Fu Peng, Cao Deng, Liang **ong, Zi-yan Huang, Ruo-qi Zhang in Scientific Data (2018)

  9. No Access

    Article

    Transcriptome sequencing provides insights into the metabolic pathways of patchouli alcohol and pogostone in Pogostemon cablin (Blanco) Benth.

    Pogostemon cablin (Blanco) Benth. is an important medicinal plant; however, its molecular biology remains largely unexplored. Here, we report the results of whole transcriptome-wide analy...

    Yang He, Cao Deng, Liang **ong, Shishang Qin, Cheng Peng in Genes & Genomics (2016)

  10. Article

    Open Access

    Survey of the genome of Pogostemon cablin provides insights into its evolutionary history and sesquiterpenoid biosynthesis

    Pogostemon cablin (Blanco) Benth. (Patchouli) is an important traditional Chinese medicinal plant that has both essential oil value and a broad range of therapeutic effects. Here we report the first de novo assem...

    Yang He, Hongtao **ao, Cao Deng, Liang **ong, Hu Nie, Cheng Peng in Scientific Reports (2016)

  11. Article

    Open Access

    The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution

    Orchids make up about 10% of all seed plant species, have great economical value and are of specific scientific interest because of their renowned flowers and ecological adaptations. Here, we report the first ...

    Guo-Qiang Zhang, Qing Xu, Chao Bian, Wen-Chieh Tsai, Chuan-Ming Yeh in Scientific Reports (2016)

  12. Article

    Open Access

    Comparative transcriptome analysis of eggplant (Solanum melongena L.) and turkey berry (Solanum torvum Sw.): phylogenomics and disease resistance analysis

    Eggplant (Solanum melongena L.) and turkey berry (S. torvum Sw.), a wild ally of eggplant with promising multi-disease resistance traits, are of great economic, medicinal and genetic importance, but genomic resou...

    Xu Yang, Yu-Fu Cheng, Cao Deng, Yan Ma, Zhi-Wen Wang, Xue-Hao Chen in BMC Genomics (2014)