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  1. Article

    Open Access

    Single-nucleus RNA-sequencing of autosomal dominant Alzheimer disease and risk variant carriers

    Genetic studies of Alzheimer disease (AD) have prioritized variants in genes related to the amyloid cascade, lipid metabolism, and neuroimmune modulation. However, the cell-specific effect of variants in these...

    Logan Brase, Shih-Feng You, Ricardo D’Oliveira Albanus in Nature Communications (2023)

  2. Article

    Open Access

    Defective proteostasis in induced pluripotent stem cell models of frontotemporal lobar degeneration

    Impaired proteostasis is associated with normal aging and is accelerated in neurodegeneration. This impairment may lead to the accumulation of protein, which can be toxic to cells and tissue. In a subset of fr...

    Sidhartha Mahali, Rita Martinez, Melvin King, Anthony Verbeck in Translational Psychiatry (2022)

  3. No Access

    Article

    Genomic atlas of the proteome from brain, CSF and plasma prioritizes proteins implicated in neurological disorders

    Understanding the tissue-specific genetic controls of protein levels is essential to uncover mechanisms of post-transcriptional gene regulation. In this study, we generated a genomic atlas of protein levels in...

    Chengran Yang, Fabiana H. G. Farias, Laura Ibanez, Adam Suhy in Nature Neuroscience (2021)

  4. No Access

    Article

    Meningeal lymphatics affect microglia responses and anti-Aβ immunotherapy

    Alzheimer’s disease (AD) is the most prevalent cause of dementia1. Although there is no effective treatment for AD, passive immunotherapy with monoclonal antibodies against amyloid beta (Aβ) is a promising therap...

    Sandro Da Mesquita, Zachary Papadopoulos, Taitea Dykstra, Logan Brase in Nature (2021)

  5. Article

    Open Access

    Functional genomic analyses uncover APOE-mediated regulation of brain and cerebrospinal fluid beta-amyloid levels in Parkinson disease

    Alpha-synuclein is the main protein component of Lewy bodies, the pathological hallmark of Parkinson’s disease. However, genetic modifiers of cerebrospinal fluid (CSF) alpha-synuclein levels remain unknown. Th...

    Laura Ibanez, Jorge A. Bahena, Chengran Yang in Acta Neuropathologica Communications (2020)

  6. Article

    Open Access

    TREM2 activation on microglia promotes myelin debris clearance and remyelination in a model of multiple sclerosis

    Multiple sclerosis (MS) is an inflammatory, demyelinating, and neurodegenerative disease of the central nervous system (CNS) triggered by autoimmune mechanisms. Microglia are critical for the clearance of myel...

    Francesca Cignarella, Fabia Filipello, Bryan Bollman in Acta Neuropathologica (2020)

  7. Article

    Correction to: Overlap** genetic architecture between Parkinson disease and melanoma

    The original version of this article unfortunately contained a mistake. Supplementary Tables 3 and 4 are not available with the rest of the supplementary material available online.

    Umber Dube, Laura Ibanez, John P. Budde, Bruno A. Benitez in Acta Neuropathologica (2020)

  8. No Access

    Article

    Overlap** genetic architecture between Parkinson disease and melanoma

    Epidemiologic studies have reported inconsistent results regarding an association between Parkinson disease (PD) and cutaneous melanoma (melanoma). Identifying shared genetic architecture between these disease...

    Umber Dube, Laura Ibanez, John P. Budde, Bruno A. Benitez in Acta Neuropathologica (2020)

  9. No Access

    Article

    The TMEM106B FTLD-protective variant, rs1990621, is also associated with increased neuronal proportion

    Apart from amyloid β deposition and tau neurofibrillary tangles, Alzheimer's disease (AD) is a neurodegenerative disorder characterized by neuronal loss and astrocytosis in the cerebral cortex. The goal of thi...

    Zeran Li, Fabiana H. G. Farias, Umber Dube, Jorge L. Del-Aguila in Acta Neuropathologica (2020)

  10. Article

    Open Access

    A single-nuclei RNA sequencing study of Mendelian and sporadic AD in the human brain

    Alzheimer’s disease (AD) is the most common form of dementia. This neurodegenerative disorder is associated with neuronal death and gliosis heavily impacting the cerebral cortex. AD has a substantial but heter...

    Jorge L. Del-Aguila, Zeran Li, Umber Dube in Alzheimer's Research & Therapy (2019)

  11. Article

    Open Access

    TREM2 brain transcript-specific studies in AD and TREM2 mutation carriers

    Low frequency coding variants in TREM2 are associated with Alzheimer disease (AD) risk and cerebrospinal fluid (CSF) TREM2 protein levels are different between AD cases and controls. Similarly, TREM2 risk variant...

    Jorge L. Del-Aguila, Bruno A. Benitez, Zeran Li, Umber Dube in Molecular Neurodegeneration (2019)

  12. Article

    Open Access

    Parkinson disease polygenic risk score is associated with Parkinson disease status and age at onset but not with alpha-synuclein cerebrospinal fluid levels

    The genetic architecture of Parkinson’s Disease (PD) is complex and not completely understood. Multiple genetic studies to date have identified multiple causal genes and risk loci. Nevertheless, most of the ex...

    Laura Ibanez, Umber Dube, Benjamin Saef, John Budde, Kathleen Black in BMC Neurology (2017)

  13. Article

    Open Access

    Primary fibroblasts from CSPα mutation carriers recapitulate hallmarks of the adult onset neuronal ceroid lipofuscinosis

    Mutations in the co- chaperone protein, CSPα, cause an autosomal dominant, adult-neuronal ceroid lipofuscinosis (AD-ANCL). The current understanding of CSPα function exclusively at the synapse fails to explain...

    Bruno A. Benitez, Mark S. Sands in Scientific Reports (2017)

  14. Article

    Open Access

    Resequencing analysis of five Mendelian genes and the top genes from genome-wide association studies in Parkinson’s Disease

    Most sequencing studies in Parkinson’s disease (PD) have focused on either a particular gene, primarily in familial and early onset PD samples, or on screening single variants in sporadic PD cases. To date, th...

    Bruno A. Benitez, Albert A. Davis, Sheng Chih ** in Molecular Neurodegeneration (2016)

  15. No Access

    Protocol

    Pooled-DNA Sequencing for Elucidating New Genomic Risk Factors, Rare Variants Underlying Alzheimer’s Disease

    Analyses of genome-wide association studies (GWAS) for complex disorders usually identify common variants with a relatively small effect size that only explain a small proportion of phenotypic heritability. Se...

    Sheng Chih **, Bruno A. Benitez, Yuetiva Deming in Systems Biology of Alzheimer's Disease (2016)

  16. Article

    Open Access

    Clinically early-stage CSPα mutation carrier exhibits remarkable terminal stage neuronal pathology with minimal evidence of synaptic loss

    Autosomal dominant adult-onset neuronal ceroid lipofuscinosis (AD-ANCL) is a multisystem disease caused by mutations in the DNAJC5 gene. DNAJC5 encodes Cysteine String Protein-alpha (CSPα), a putative synaptic pr...

    Bruno A. Benitez, Nigel J. Cairns in Acta Neuropathologica Communications (2015)

  17. Article

    Open Access

    TREM2 is associated with increased risk for Alzheimer’s disease in African Americans

    TREM2 encodes for triggering receptor expressed on myeloid cells 2 and has rare, coding variants that associate with risk for late-onset Alzheimer’s disease (LOAD) in Caucasians of European and...

    Sheng Chih **, Minerva M Carrasquillo, Bruno A Benitez in Molecular Neurodegeneration (2015)

  18. No Access

    Article

    Rare coding variants in the phospholipase D3 gene confer risk for Alzheimer’s disease

    Whole-exome sequencing reveals that a rare variant of phospholipase D3 (PLD3(V232M)) segregates with Alzheimer’s disease status in two independent families and doubles risk for the disease in case–control series,...

    Carlos Cruchaga, Celeste M. Karch, Sheng Chih **, Bruno A. Benitez, Yefei Cai in Nature (2014)

  19. Article

    Open Access

    Pooled-DNA sequencing identifies novel causative variants in PSEN1, GRN and MAPT in a clinical early-onset and familial Alzheimer's disease Ibero-American cohort

    Some familial Alzheimer's disease (AD) cases are caused by rare and highly-penetrant mutations in APP, PSEN1, and PSEN2. Mutations in GRN and MAPT, two genes associated with frontotemporal dementia (FTD), have be...

    Sheng Chih **, Pau Pastor, Breanna Cooper in Alzheimer's Research & Therapy (2012)

  20. No Access

    Article

    Exploration of genetic susceptibility factors for Parkinson’s disease in a South American sample

    Bruno A. Benitez, Diego A. Forero, Gonzalo H. Arboleda in Journal of Genetics (2010)