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  1. No Access

    Article

    Prediction and map** the productivity of eucalyptus clones with environmental covariates

    The quantitative nature of wood production poses a challenge for breeders. The complex interaction of genotypes with environments (G×E) makes cultivars recommendation difficult. Our objective was to model the ...

    Leonardo Oliveira Silva da Costa, Izabel Christina Gava de Souza in Tree Genetics & Genomes (2024)

  2. No Access

    Article

    Polyploidy in maize: from evolution to breeding

    Polyploidy played an important role in the evolution of the three most important crops: wheat, maize and rice, each of them providing a unique model for studying allopolyploidy, segmental alloploidy or paleopo...

    Grigorii Batiru, Thomas Lübberstedt in Theoretical and Applied Genetics (2024)

  3. No Access

    Article

    Quantitative trait locus analysis of gray leaf spot resistance in the maize IBM Syn10 DH population

    The exploration and dissection of a set of QTLs and candidate genes for gray leaf spot disease resistance using two fully assembled parental genomes may help expedite maize resistance breeding.

    Lina Cui, Mingfei Sun, Lin Zhang, Hongjie Zhu in Theoretical and Applied Genetics (2024)

  4. Article

    Open Access

    Accuracy of prediction from multi-environment trials for new locations using pedigree information and environmental covariates: the case of sorghum (Sorghum bicolor (L.) Moench) breeding

    We investigate a method of extracting and fitting synthetic environmental covariates and pedigree information in multilocation trial data analysis to predict genotype performances in untested locations.

    Diriba Tadese, Hans‑Peter Piepho, Jens Hartung in Theoretical and Applied Genetics (2024)

  5. Article

    Open Access

    Genome-wide atlas of rust resistance loci in wheat

    Rust diseases, including leaf rust, stripe/yellow rust, and stem rust, significantly impact wheat (Triticum aestivum L.) yields, causing substantial economic losses every year. Breeding and deployment of cultivar...

    **gyang Tong, Cong Zhao, Dan Liu in Theoretical and Applied Genetics (2024)

  6. Article

    Open Access

    Genoty**-by-sequencing targets genic regions and improves resolution of genome-wide association studies in autotetraploid potato

    De novo genoty** in potato using methylation-sensitive GBS discovers SNPs largely confined to genic or gene-associated regions and displays enhanced effectiveness in estimating LD decay rates, population str...

    Sanjeev Kumar Sharma, Karen McLean, Peter E. Hedley in Theoretical and Applied Genetics (2024)

  7. No Access

    Article

    Cold tolerance SNPs and candidate gene mining in the soybean germination stage based on genome-wide association analysis

    Three QTLs associated with low-temperature tolerance were identified by genome-wide association analysis, and 15 candidate genes were identified by haplotype analysis and gene expression analyses.

    Yuehan Chen, Zhi Liu, Dezhi Han, Qing Yang, Chenhui Li in Theoretical and Applied Genetics (2024)

  8. No Access

    Article

    GWAS elucidated grain yield genetics in Indian spring wheat under diverse water conditions

    Underpinned natural variations and key genes associated with yield under different water regimes, and identified genomic signatures of genetic gain in the Indian wheat breeding program. A novel KASP marker for...

    Arpit Gaur, Yogesh **dal, Vikram Singh, Ratan Tiwari in Theoretical and Applied Genetics (2024)

  9. No Access

    Article

    Comparative genome-wide analysis of circular RNAs in Brassica napus L.: target-site versus non-target-site resistance to herbicide stress

    Circular RNAs (circRNAs), a class of non-coding RNA molecules, are recognized for their unique functions; however, their responses to herbicide stress in Brassica napus remain unclear. In this study, the role of ...

    Yue Guo, Ting Wang, **nyu Lu, Weilong Li, **nlei Lv in Theoretical and Applied Genetics (2024)

  10. No Access

    Article

    High-dimensional multi-omics measured in controlled conditions are useful for maize platform and field trait predictions

    Transcriptomics and proteomics information collected on a platform can predict additive and non-additive effects for platform traits and additive effects for field traits.

    Baber Ali, Bertrand Huguenin-Bizot, Maxime Laurent in Theoretical and Applied Genetics (2024)

  11. Article

    Open Access

    Genetic characterization of cucumber genetic resources in the NARO Genebank indicates their multiple dispersal trajectories to the East

    Genoty**-by-sequencing of 723 worldwide cucumber genetic resources revealed that cucumbers were dispersed eastward via at least three distinct routes, one to Southeast Asia and two from different directions ...

    Gentaro Shigita, Koichiro Shimomura, Tran Phuong Dung in Theoretical and Applied Genetics (2024)

  12. No Access

    Article

    Genome-wide association studies dissect low-phosphorus stress response genes underling field and seedling traits in maize

    Phosphorus (P) is an essential element for plant growth, and its deficiency can cause decreased crop yield. This study systematically evaluated the low-phosphate (Pi) response traits in a large population at m...

    Bowen Luo, Guidi Zhang, Ting Yu, Chong Zhang in Theoretical and Applied Genetics (2024)

  13. Article

    Open Access

    Rapid improvement of grain appearance in three-line hybrid rice via CRISPR/Cas9 editing of grain size genes

    Genetic editing of grain size genes quickly improves three-line hybrid rice parents to increase the appearance quality and yield of hybrid rice.

    Juan Huang, Weiwei Chen, Lijun Gao, Dong** Qing in Theoretical and Applied Genetics (2024)

  14. No Access

    Article

    Fine map** and identification of a Fusarium wilt resistance gene FwS1 in pea

    A Fusarium wilt resistance gene FwS1 on pea chromosome 6 was identified and mapped to a 91.4 kb region by a comprehensive genomic-based approach, and the gene Psat6g003960 harboring NB-ARC domain was identified a...

    Dong Deng, Suli Sun, Wenqi Wu, Canxing Duan, Xuehong Wu in Theoretical and Applied Genetics (2024)

  15. No Access

    Article

    Pearl millet a promising fodder crop for changing climate: a review

    The agricultural sector faces colossal challenges amid environmental changes and a burgeoning human population. In this context, crops must adapt to evolving climatic conditions while meeting increasing produc...

    Harmanpreet Singh Daduwal, Ruchika Bhardwaj in Theoretical and Applied Genetics (2024)

  16. No Access

    Article

    Abnormal Degraded Tapetum 1 (ADT1) is required for tapetal cell death and pollen development in rice

    The timely degradation of tapetum, the innermost somatic anther cell layer in flowering plants, is critical for pollen development. Although several genes involved in tapetum development have been characterize...

    Jialin Liu, Qing Ye, Wenxiang Jiang, Shiqiang Liu in Theoretical and Applied Genetics (2024)

  17. No Access

    Article

    QTL map** of downy mildew resistance in foxtail millet by SLAF‑seq and BSR-seq analysis

    Key message Three major QTLs for resistance to downy mildew were located within an 0.78 Mb interval on chromosome 8 in foxtail millet.

    Xu Liu, Nuo Zhang, Yurong Sun, Zhenxin Fu, Yuanhuai Han in Theoretical and Applied Genetics (2024)

  18. No Access

    Article

    Fine map** and transcriptome profiling reveal CpAPRR2 to modulate immature fruit rind color formation in zucchini (Cucurbita pepo)

    A large fragment deletion of CpAPRR2, encoding a two-component response regulator-like protein, which influences immature white rind color formation in zucchini (Cucurbita pepo).

    Wenqi Ding, Yusong Luo, Wenling Li, Fangyuan Chen in Theoretical and Applied Genetics (2024)

  19. No Access

    Article

    Genome-wide association study and linkage map** reveal TaqW-6B associated with water-extractable arabinoxylan content in wheat grain

    A novel QTL, TaqW-6B of water-extractable arabinoxylan content in the wheat grain on chromosome 6BL was identified and fine mapped in a narrow region 3.8 Mb.

    Qiong Li, Zhankui Zeng, Yue Zhao, Jiachuang Li in Theoretical and Applied Genetics (2024)

  20. No Access

    Article

    Introgression of chromosome 5P from Agropyron cristatum enhances grain weight in a wheat background

    A grain weight locus from Agropyron cristatum chromosome 5P increases grain weight in different wheat backgrounds and is localized to 5PL (bin 7–12).

    Haiming Han, Junli Yang, Kai Qi, Haoyu Zhu, Panqiang Wu in Theoretical and Applied Genetics (2024)

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