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  1. Article

    Open Access

    Increased ONECUT2 induced by Helicobacter pylori promotes gastric cancer cell stemness via an AKT-related pathway

    Helicobacter pylori (HP) infection initiates and promotes gastric carcinogenesis. ONECUT2 shows promise for tumor diagnosis, prognosis, and treatment. This study explored ONECUT2’s role and the specific mechanism...

    Mi Lin, Ru-Hong Tu, Sheng-Ze Wu, Qing Zhong, Kai Weng, Yu-Kai Wu in Cell Death & Disease (2024)

  2. Article

    Open Access

    SnapFISH-IMPUTE: an imputation method for multiplexed DNA FISH data

    Chromatin spatial organization plays a crucial role in gene regulation. Recently developed and prospering multiplexed DNA FISH technologies enable direct visualization of chromatin conformation in the nucleus....

    Hongyu Yu, Daiqing Wu, Shreya Mishra, Guning Shen, Huaigu Sun in Communications Biology (2024)

  3. No Access

    Article

    Overexpression of the MiAGL1 gene from mango promoted flowering in transgenic Arabidopsis

    MADS-box genes play a vital role in the vegetative and reproductive growth of plants. In this study, a MiAGL1 gene was cloned and identified from mango (Mangifera indica L.). The DNA sequence of AGAMOUS-LIKE1 (Mi...

    Xue-mei Zeng, **n-hua He, Wen-**g Mo in Journal of Plant Biochemistry and Biotechn… (2024)

  4. No Access

    Article

    Tracking-seq reveals the heterogeneity of off-target effects in CRISPR–Cas9-mediated genome editing

    The continued development of novel genome editors calls for a universal method to analyze their off-target effects. Here we describe a versatile method, called Tracking-seq, for in situ identification of off-t...

    Ming Zhu, Runda Xu, Junsong Yuan, Jiacheng Wang, **aoyu Ren in Nature Biotechnology (2024)

  5. No Access

    Article

    Characterization of a pangolin SARS-CoV-2-related virus isolate that uses the human ACE2 receptor

    Various SARS-CoV-2-related coronaviruses have been increasingly identified in pangolins, showing a potential threat to humans. Here we report the infectivity and pathogenicity of the SARS-CoV-2-related virus, ...

    Luo-Yuan **a, Xue-Feng Wang, **ao-Ming Cui, Yi-Ming Zhang in Science China Life Sciences (2024)

  6. Article

    Open Access

    Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

    The Long-read RNA-Seq Genome Annotation Assessment Project Consortium was formed to evaluate the effectiveness of long-read approaches for transcriptome analysis. Using different protocols and sequencing platf...

    Francisco J. Pardo-Palacios, Dingjie Wang, Fairlie Reese, Mark Diekhans in Nature Methods (2024)

  7. Article

    Open Access

    PEX3 promotes regenerative repair after myocardial injury in mice through facilitating plasma membrane localization of ITGB3

    The peroxisome is a versatile organelle that performs diverse metabolic functions. PEX3, a critical regulator of the peroxisome, participates in various biological processes associated with the peroxisome. Whe...

    Jia-Teng Sun, Zi-Mu Wang, Liu-Hua Zhou, Tong-Tong Yang, Di Zhao in Communications Biology (2024)

  8. Article

    Open Access

    Permittivity tensor imaging: modular label-free imaging of 3D dry mass and 3D orientation at high resolution

    The dry mass and the orientation of biomolecules can be imaged without a label by measuring their permittivity tensor (PT), which describes how biomolecules affect the phase and polarization of light. Three-di...

    Li-Hao Yeh, Ivan E. Ivanov, Talon Chandler, Janie R. Byrum in Nature Methods (2024)

  9. No Access

    Article

    Decoding the biochemical dialogue: metabolomic insights into soybean defense strategies against diverse pathogens

    Soybean, a crucial global leguminous crop, confronts persistent threats from diverse pathogens, exerting a profound impact on global yields. While genetic dimensions of soybean-pathogen interactions have garne...

    Min Qiu, Mengjun Tian, Yaru Sun, Huaibo Li, Wenwen Huang in Science China Life Sciences (2024)

  10. Article

    Open Access

    Stomach as the target organ of Rickettsia heilongjiangensis infection in C57BL/6 mice identified by click chemistry

    Spotted fever group rickettsiae (SFGR) are obligate intracellular bacteria that cause spotted fever. The limitations of gene manipulation pose great challenges to studying the infection mechanisms of Rickettsia. ...

    Juan Wang, Li-Feng Du, Ming-Zhu Zhang, Wei Wei, Zi-Yun Chen in Communications Biology (2024)

  11. Article

    Open Access

    The Mohawk homeobox gene represents a marker and osteo-inhibitory factor in calvarial suture osteoprogenitor cells

    The regeneration of the mammalian skeleton’s craniofacial bones necessitates the action of intrinsic and extrinsic inductive factors from multiple cell types, which function hierarchically and temporally to co...

    Yiyun Wang, Qizhi Qin, Ziyi Wang, Stefano Negri, Takashi Sono , in Cell Death & Disease (2024)

  12. Article

    Open Access

    Necroptosis stimulates interferon-mediated protective anti-tumor immunity

    Necroptosis is an inflammatory form of cell suicide that critically depends on the kinase activity of Receptor Interacting Protein Kinase 3 (RIPK3). Previous studies showed that immunization with necroptotic c...

    A. Justin Rucker, Christa S. Park, Qi **g Li, E. Ashley Moseman in Cell Death & Disease (2024)

  13. Article

    Open Access

    Small extracellular vesicles from young plasma reverse age-related functional declines by improving mitochondrial energy metabolism

    Recent investigations into heterochronic parabiosis have unveiled robust rejuvenating effects of young blood on aged tissues. However, the specific rejuvenating mechanisms remain incompletely elucidated. Here ...

    **aorui Chen, Yang Luo, Qing Zhu, **gzi Zhang, Huan Huang, Yansheng Kan in Nature Aging (2024)

  14. Article

    Open Access

    Inhibition of fatty acid uptake by TGR5 prevents diabetic cardiomyopathy

    Diabetic cardiomyopathy is characterized by myocardial lipid accumulation and cardiac dysfunction. Bile acid metabolism is known to play a crucial role in cardiovascular and metabolic diseases. Takeda G-protei...

    Hu Wang, Jiaxing Wang, Hao Cui, Chenyu Fan, Yuzhou Xue, Huiying Liu in Nature Metabolism (2024)

  15. No Access

    Article

    Map** putative enhancers in mouse oocytes and early embryos reveals TCF3/12 as key folliculogenesis regulators

    Dynamic epigenomic reprogramming occurs during mammalian oocyte maturation and early development. However, the underlying transcription circuitry remains poorly characterized. By map** cis-regulatory elements u...

    Bofeng Liu, Yuanlin He, **aotong Wu, Zili Lin, **g Ma, Yuexin Qiu in Nature Cell Biology (2024)

  16. No Access

    Article

    Ferroptosis: a critical mechanism of N6-methyladenosine modification involved in carcinogenesis and tumor progression

    Ferroptosis is an iron-dependent regulatory cell necrosis induced by iron overload and lipid peroxidation. It occurs when multiple redox-active enzymes are ectopically expressed or show abnormal function. Henc...

    Qingqing Wei, Changning Xue, Mengna Li, Jianxia Wei in Science China Life Sciences (2024)

  17. Article

    Open Access

    MIR396-GRF/GIF enhances in planta shoot regeneration of Dendrobium catenatum

    Recent studies on co-transformation of the growth regulator, TaGRF4-GIF1 chimera (Growth Regulating Factor 4-GRF Interacting Factor 1), in cultivated wheat varieties (Triticum aestivum), showed improved regenerat...

    Zhenyu Yang, Meili Zhao, **aojie Zhang, Lili Gu, Jian Li, Feng Ming in BMC Genomics (2024)

  18. No Access

    Article

    Early-onset and later-onset cancer: trends, risk factors, and prevention in Northern China

    The characteristics of early-onset (onset age <50 years) and later-onset (onset age ≽ 50 years) cancers differ significantly. Identifying novel risk factors for both types of cancer is crucial for increasing a...

    Tong Liu, Chen-An Liu, Qing-Song Zhang, Qi Zhang in Science China Life Sciences (2024)

  19. Article

    Open Access

    Deprivation of methionine inhibits osteosarcoma growth and metastasis via C1orf112-mediated regulation of mitochondrial functions

    Osteosarcoma is a malignant bone tumor that primarily inflicts the youth. It often metastasizes to the lungs after chemotherapy failure, which eventually shortens patients’ lives. Thus, there is a dire clinica...

    **ndan Zhang, Zhenggang Zhao, Xuepeng Wang, Shiwei Zhang in Cell Death & Disease (2024)

  20. Article

    Open Access

    Deficiency of ADAR2 ameliorates metabolic-associated fatty liver disease via AMPK signaling pathways in obese mice

    Non-alcoholic fatty liver disease (NAFLD) is a chronic disease caused by hepatic steatosis. Adenosine deaminases acting on RNA (ADARs) catalyze adenosine to inosine RNA editing. However, the functional role of...

    Mei-Lang Kung, Siao Muk Cheng, Yun-Han Wang, Kai-Pi Cheng in Communications Biology (2024)

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