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  1. No Access

    Article

    A cross-species proteomic map reveals neoteny of human synapse development

    The molecular mechanisms and evolutionary changes accompanying synapse development are still poorly understood1,2. Here we generate a cross-species proteomic map of synapse development in the human, macaque and m...

    Li Wang, Kaifang Pang, Li Zhou, Arantxa Cebrián-Silla, Susana González-Granero in Nature (2023)

  2. Article

    Open Access

    Robustness of single-cell RNA-seq for identifying differentially expressed genes

    A common feature of single-cell RNA-seq (scRNA-seq) data is that the number of cells in a cell cluster may vary widely, ranging from a few dozen to several thousand. It is not clear whether scRNA-seq data from...

    Yong Liu, **g Huang, Rajan Pandey, Pengyuan Liu, Bhavika Therani in BMC Genomics (2023)

  3. No Access

    Article

    Microwave triggered multifunctional nanoplatform for targeted photothermal-chemotherapy in castration-resistant prostate cancer

    Lacking a precise targeting strategy, castration-resistant prostate cancer (CRPC) is still hard to be treat effectively. Exploring treatment options that can accurately target CPRC is an important issue with u...

    Pengyuan Liu, Yajun Wu, **aogang Xu, Xudong Fan, Chuan Sun, **aojie Chen in Nano Research (2023)

  4. Article

    Open Access

    Transcriptomic analysis identifies novel candidates in cardiorenal pathology mediated by chronic peritoneal dialysis

    Peritoneal dialysis (PD) is associated with increased cardiovascular (CV) risk. Studies of PD-related CV pathology in animal models are lacking despite the clinical importance. Here we introduce the phenotypic...

    Victoria L. Nasci, Pengyuan Liu, Amanda M. Marks, Adaysha C. Williams in Scientific Reports (2023)

  5. No Access

    Article

    Fetal pulmonary hypertension: dysregulated microRNA-34c-Notch1 axis contributes to impaired angiogenesis in an ovine model

    Persistent pulmonary hypertension of the newborn (PPHN) occurs when pulmonary vascular resistance (PVR) fails to decrease at birth. Decreased angiogenesis in the lung contributes to the persistence of high PVR...

    Devashis Mukherjee, Ujala Rana, Alison J. Kriegel, Pengyuan Liu in Pediatric Research (2023)

  6. Article

    Open Access

    LncRNA SFTA1P promotes cervical cancer progression by interaction with PTBP1 to facilitate TPM4 mRNA degradation

    Long non-coding RNAs (lncRNAs) play key roles in cancer development and progression. However, the biological function and clinical significance of most lncRNAs in cervical cancer remain elusive. In this study,...

    Aoran Luo, **aoxiao Lan, Qiongzi Qiu, Qing Zhou, Jia Li in Cell Death & Disease (2022)

  7. No Access

    Article

    Molecular diversity and biogeography of benthic microeukaryotes in temperate seagrass (Zostera japonica) systems of northern China

    The productivity and health of seagrass depend on the combined inputs of nutrients from the water and sediments in which they grow and the microbiota with which they live intimately. However, little is known a...

    Pengyuan Liu, Haikun Zhang, Yanyu Sun, Caixia Wang, **aoke Hu in Acta Oceanologica Sinica (2022)

  8. Article

    Open Access

    LCAT1 is an oncogenic LncRNA by stabilizing the IGF2BP2-CDC6 axis

    Long non-coding RNAs (lncRNAs) is known to play vital roles in modulating tumorigenesis. We previously reported that LCAT1, a novel lncRNA, promotes the growth and metastasis of lung cancer cells both in vitro...

    Juze Yang, **nyi Qian, Qiongzi Qiu, Lingling Xu, Meidie Pan, Jia Li in Cell Death & Disease (2022)

  9. Article

    Open Access

    circFBXO7/miR-96-5p/MTSS1 axis is an important regulator in the Wnt signaling pathway in ovarian cancer

    CircRNAs are a novel class of evolutionarily conserved noncoding RNA molecules that form covalently closed continuous loop structures without 5′ caps and 3′ poly(A) tails. Accumulating evidence suggests that c...

    Mengting Wu, Qiongzi Qiu, Qing Zhou, Jia Li, Juze Yang, Chengcai Zheng in Molecular Cancer (2022)

  10. Article

    Open Access

    Long-read sequencing unveils high-resolution HPV integration and its oncogenic progression in cervical cancer

    Integration of human papillomavirus (HPV) DNA into the human genome is considered as a key event in cervical carcinogenesis. Here, we perform comprehensive characterization of large-range virus-human integrati...

    Liyuan Zhou, Qiongzi Qiu, Qing Zhou, Jianwei Li, Mengqian Yu in Nature Communications (2022)

  11. No Access

    Article

    Multi-omics map** of human papillomavirus integration sites illuminates novel cervical cancer target genes

    Integration of human papillomavirus (HPV) into the host genome is a dominant feature of invasive cervical cancer (ICC), yet the tumorigenicity of cis genomic changes at integration sites remains largely unders...

    Marissa Iden, Shirng-Wern Tsaih, Yi-Wen Huang, Pengyuan Liu in British Journal of Cancer (2021)

  12. Article

    Open Access

    LCAT3, a novel m6A-regulated long non-coding RNA, plays an oncogenic role in lung cancer via binding with FUBP1 to activate c-MYC

    Long non-coding RNAs (lncRNAs) are important epigenetic regulators, which play critical roles in diverse physiological and pathological processes. However, the regulatory mechanism of lncRNAs in lung carcinoge...

    **nyi Qian, Juze Yang, Qiongzi Qiu, Xufan Li in Journal of Hematology & Oncology (2021)

  13. Article

    Open Access

    Occupational gender segregation and gendered language in a language without gender: trends, variations, implications for social development in China

    This paper proposes a textual analytics approach to the discovery of trends and variations in social development. Specifically, we have designed a linguistic index that measures the marked usage of gendered mo...

    Qi Su, Pengyuan Liu, Wei Wei, Shucheng Zhu in Humanities and Social Sciences Communicati… (2021)

  14. Article

    Open Access

    Nuclear ErbB2 represses DEPTOR transcription to inhibit autophagy in breast cancer cells

    ErbB2, a classical receptor tyrosine kinase, is frequently overexpressed in breast cancer cells. Although the role of ErbB2 in the transmission of extracellular signals to intracellular matrix has been widely ...

    Yanli Bi, Longyuan Gong, Pengyuan Liu, **ufang **ong, Yongchao Zhao in Cell Death & Disease (2021)

  15. Article

    Open Access

    Plasma-derived exosomal miR-15a-5p as a promising diagnostic biomarker for early detection of endometrial carcinoma

    Endometrial cancer (EC) is a major cause of death among gynecologic malignancies. To improve early detection of EC in patients, we carried out a large plasma-derived exosomal microRNA (miRNA) studies for diagn...

    Lanyun Zhou, Wei Wang, Fenfen Wang, Siqi Yang, Jiaqi Hu, Bingjian Lu in Molecular Cancer (2021)

  16. Article

    Open Access

    Alternative polyadenylation: methods, mechanism, function, and role in cancer

    Occurring in over 60% of human genes, alternative polyadenylation (APA) results in numerous transcripts with differing 3’ends, thus greatly expanding the diversity of mRNAs and of proteins derived from a singl...

    Yi Zhang, Lian Liu, Qiongzi Qiu, Qing Zhou in Journal of Experimental & Clinical Cancer … (2021)

  17. Article

    Open Access

    tRNA-derived RNA fragments in cancer: current status and future perspectives

    Non-coding RNAs (ncRNAs) have been the focus of many studies over the last few decades, and their fundamental roles in human diseases have been well established. Transfer RNAs (tRNAs) are housekee** ncRNAs t...

    Mengqian Yu, Bingjian Lu, Jisong Zhang, **wang Ding in Journal of Hematology & Oncology (2020)

  18. Article

    Open Access

    Prophylactic chemotherapeutic hyperthermic intraperitoneal perfusion reduces peritoneal metastasis in gastric cancer: a retrospective clinical study

    Peritoneal metastasis is the most frequent failure in gastric cancer. This study evaluated the role of prophylactic chemotherapeutic hyperthermic intraperitoneal perfusion (CHIP) in patients after D2 dissection.

    Lucheng Zhu, Zhizheng Xu, Yajun Wu, Pengyuan Liu, Jianing Qian, Shuhuan Yu in BMC Cancer (2020)

  19. No Access

    Article

    Conrad’s F-condition for partially ordered monoids

    In this paper, we study Conrad’s F-condition for lattice-ordered monoids, Riesz monoids, and pre-Riesz monoids.

    Pengyuan Liu, Yichuan Yang, Muhammad Zafrullah in Soft Computing (2020)

  20. No Access

    Article

    Unsupervised learning of monocular depth and ego-motion with space–temporal-centroid loss

    We propose DPCNN (Depth and Pose Convolutional Network), a novel framework for monocular depth with absolute scale and camera motion estimation from videos. DPCNN uses our proposed stereo training examples, in...

    Junning Zhang, Qunxing Su, Pengyuan Liu in International Journal of Machine Learning … (2020)

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