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  1. Article

    Open Access

    Tissue-resident B cells orchestrate macrophage polarisation and function

    B cells play a central role in humoral immunity but also have antibody-independent functions. Studies to date have focused on B cells in blood and secondary lymphoid organs but whether B cells reside in non-ly...

    Ondrej Suchanek, John R. Ferdinand, Zewen K. Tuong in Nature Communications (2023)

  2. Article

    Open Access

    Identification of gut microbial species linked with disease variability in a widely used mouse model of colitis

    Experimental mouse models are central to basic biomedical research; however, variability exists across genetically identical mice and mouse facilities making comparisons difficult. Whether specific indigenous ...

    Samuel C. Forster, Simon Clare, Benjamin S. Beresford-Jones in Nature Microbiology (2022)

  3. Article

    Open Access

    Preclinical development of a bispecific TNFα/IL-23 neutralising domain antibody as a novel oral treatment for inflammatory bowel disease

    Anti-TNFα and anti-IL-23 antibodies are highly effective therapies for Crohn’s disease or ulcerative colitis in a proportion of patients. V56B2 is a novel bispecific domain antibody in which a llama-derived IL...

    Kevin J. Roberts, Marion F. Cubitt, Timothy M. Carlton in Scientific Reports (2021)

  4. Article

    An invariant Trypanosoma vivax vaccine antigen induces protective immunity

    Trypanosomes are protozoan parasites that cause infectious diseases, including African trypanosomiasis (slee** sickness) in humans and nagana in economically important livestock1,2. An effective vaccine against...

    Delphine Autheman, Cécile Crosnier, Simon Clare, David A. Goulding in Nature (2021)

  5. Article

    Open Access

    Author Correction: Establishment, optimisation and quantitation of a bioluminescent murine infection model of visceral leishmaniasis for systematic vaccine screening

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    Han Boon Ong, Simon Clare, Adam Jonathan Roberts, Mary Edythe Wilson in Scientific Reports (2021)

  6. No Access

    Article

    Gut-educated IgA plasma cells defend the meningeal venous sinuses

    The central nervous system has historically been viewed as an immune-privileged site, but recent data have shown that the meninges—the membranes that surround the brain and spinal cord—contain a diverse popula...

    Zachary Fitzpatrick, Gordon Frazer, Ashley Ferro, Simon Clare, Nicolas Bouladoux in Nature (2020)

  7. Article

    Open Access

    Genomics of the Argentinian cholera epidemic elucidate the contrasting dynamics of epidemic and endemic Vibrio cholerae

    In order to control and eradicate epidemic cholera, we need to understand how epidemics begin, how they spread, and how they decline and eventually end. This requires extensive sampling of epidemic disease ove...

    Matthew J. Dorman, Daryl Domman, Tomás Poklepovich in Nature Communications (2020)

  8. Article

    Open Access

    Lentiviral gene therapy rescues p47phox chronic granulomatous disease and the ability to fight Salmonella infection in mice

    Chronic granulomatous disease (CGD) is an inherited primary immunodeficiency disorder characterised by recurrent and often life-threatening infections and hyperinflammation. It is caused by defects of the phag...

    Andrea Schejtman, Walmir Cutrim Aragão-Filho, Simon Clare, Marta Zinicola in Gene Therapy (2020)

  9. Article

    Open Access

    Establishment, optimisation and quantitation of a bioluminescent murine infection model of visceral leishmaniasis for systematic vaccine screening

    Visceral leishmaniasis is an infectious parasitic disease caused by the protozoan parasites Leishmania donovani and Leishmania infantum. The drugs currently used to treat visceral leishmaniasis suffer from toxici...

    Han Boon Ong, Simon Clare, Adam Jonathan Roberts, Mary Edythe Wilson in Scientific Reports (2020)

  10. No Access

    Article

    High-throughput phenoty** reveals expansive genetic and structural underpinnings of immune variation

    By develo** a high-density murine immunophenoty** platform compatible with high-throughput genetic screening, we have established profound contributions of genetics and structure to immune variation ( ...

    Lucie Abeler-Dörner, Adam G. Laing, Anna Lorenc, Dmitry S. Ushakov in Nature Immunology (2020)

  11. Article

    Open Access

    An African Salmonella Typhimurium ST313 sublineage with extensive drug-resistance and signatures of host adaptation

    Bloodstream infections by Salmonella enterica serovar Typhimurium constitute a major health burden in sub-Saharan Africa (SSA). These invasive non-typhoidal (iNTS) infections are dominated by isolates of the anti...

    Sandra Van Puyvelde, Derek Pickard, Koen Vandelannoote, Eva Heinz in Nature Communications (2019)

  12. No Access

    Article

    Adaptation of host transmission cycle during Clostridium difficile speciation

    Bacterial speciation is a fundamental evolutionary process characterized by diverging genotypic and phenotypic properties. However, the selective forces that affect genetic adaptations and how they relate to t...

    Nitin Kumar, Hilary P. Browne, Elisa Viciani, Samuel C. Forster in Nature Genetics (2019)

  13. Chapter

    Right Asepsis with ANTT® for Infection Prevention

    Aseptic technique, which involves infection prevention actions designed to protect patients from infection when undergoing invasive clinical procedures, is universally prescribed by guideline makers as a criti...

    Stephen Rowley, Simon Clare in Vessel Health and Preservation: The Right … (2019)

  14. Article

    Open Access

    Alpha kinase 1 controls intestinal inflammation by suppressing the IL-12/Th1 axis

    Inflammatory bowel disease (IBD) are heterogenous disorders of the gastrointestinal tract caused by a spectrum of genetic and environmental factors. In mice, overlap** regions of chromosome 3 have been assoc...

    Grigory Ryzhakov, Nathaniel R. West, Fanny Franchini, Simon Clare in Nature Communications (2018)

  15. Article

    Open Access

    Preclinical Development of a Novel, Orally-Administered Anti-Tumour Necrosis Factor Domain Antibody for the Treatment of Inflammatory Bowel Disease

    TNFα is an important cytokine in inflammatory bowel disease. V565 is a novel anti-TNFα domain antibody developed for oral administration in IBD patients, derived from a llama domain antibody and engineered to ...

    J. Scott Crowe, Kevin J. Roberts, Timothy M. Carlton, Luana Maggiore in Scientific Reports (2018)

  16. No Access

    Article

    Genome-wide in vivo screen identifies novel host regulators of metastatic colonization

    Screening mutant mouse lines using a genome-wide in vivo assay identifies microenvironmental regulators of metastatic colonization and defines SPNS2 as an important mediator of lung colonization.

    Louise van der Weyden, Mark J. Arends, Andrew D. Campbell, Tobias Bald in Nature (2017)

  17. No Access

    Article

    Single-cell RNA-seq identifies a PD-1hi ILC progenitor and defines its development pathway

    Single-cell RNA sequencing of bone marrow innate lymphoid cell (ILC) precursors reveals that PD-1 marks a committed ILC progenitor and that ILC2 development requires Bcl11b and IL-25R expression; activated ILCs c...

    Yong Yu, Jason C. H. Tsang, Cui Wang, Simon Clare, Juexuan Wang, ** Chen in Nature (2016)

  18. No Access

    Article

    C13orf31 (FAMIN) is a central regulator of immunometabolic function

    Variants of the human gene C13orf31 (LACC1) are associated with various disease risks. Kaser and colleagues identify a role for the protein encoded (called ‘FAMIN’) in regulating macrophage fatty-acid oxidation a...

    M Zaeem Cader, Katharina Boroviak, Qifeng Zhang, Ghazaleh Assadi in Nature Immunology (2016)

  19. No Access

    Article

    T cell fate and clonality inference from single-cell transcriptomes

    The TraCeR tool extracts full-length, paired T cell receptor sequences from single-cell RNA-sequencing data from T lymphocytes, enabling a combination of clonotype and functional analysis.

    Michael J T Stubbington, Tapio Lönnberg, Valentina Proserpio, Simon Clare in Nature Methods (2016)

  20. No Access

    Article

    Emergence of host-adapted Salmonella Enteritidis through rapid evolution in an immunocompromised host

    Host adaptation is a key factor contributing to the emergence of new bacterial, viral and parasitic pathogens. Many pathogens are considered promiscuous because they cause disease across a range of host specie...

    Elizabeth J. Klemm, Effrossyni Gkrania-Klotsas, James Hadfield in Nature Microbiology (2016)

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