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  1. Rapid automated iterative small-molecule synthesis

    Automated iterative small-molecule synthesis has the potential to advance and democratize the discovery of new medicines, materials and many other...

    Wesley Wang, Nicholas H. Angello, ... Martin D. Burke in Nature Synthesis
    Article 29 May 2024
  2. Enhanced map** of small-molecule binding sites in cells

    Photoaffinity probes are routinely utilized to identify proteins that interact with small molecules. However, despite this common usage, resolving...

    Jacob M. Wozniak, Weichao Li, ... Christopher G. Parker in Nature Chemical Biology
    Article 02 January 2024
  3. Targeting the human gut microbiome with small-molecule inhibitors

    The human gut microbiome is a complex microbial community that is strongly linked to both host health and disease. However, the detailed molecular...

    Amelia Y. M. Woo, Miguel A. Aguilar Ramos, ... Emily P. Balskus in Nature Reviews Chemistry
    Article 18 April 2023
  4. Large-scale analysis of small molecule-RNA interactions using multiplexed RNA structure libraries

    The large-scale analysis of small-molecule binding to diverse RNA structures is key to understanding the required interaction properties and...

    Ryosuke Nagasawa, Kazumitsu Onizuka, ... Fumi Nagatsugi in Communications Chemistry
    Article Open access 01 May 2024
  5. Biophysical Analysis of Small Molecule Binding to Viral RNA Structures

    RNA molecules are essential for carrying genetic information and regulating gene expression in most organisms including human pathogenic RNA and...
    Liang-Yuan Chiu, Jesse Davila-Calderon, ... Blanton S. Tolbert in Nucleic Acid Aptamers
    Protocol 2023
  6. Small molecule autoencoders: architecture engineering to optimize latent space utility and sustainability

    Autoencoders are frequently used to embed molecules for training of downstream deep learning models. However, evaluation of the chemical information...

    Marie Oestreich, Iva Ewert, Matthias Becker in Journal of Cheminformatics
    Article Open access 05 March 2024
  7. CineMol: a programmatically accessible direct-to-SVG 3D small molecule drawer

    Effective visualization of small molecules is paramount in conveying concepts and results in cheminformatics. Scalable vector graphics (SVG) are...

    David Meijer, Marnix H. Medema, Justin J. J. van der Hooft in Journal of Cheminformatics
    Article Open access 23 May 2024
  8. Small-molecule organic electrode materials for rechargeable batteries

    Small-molecule organic electrode materials (SMOEMs) have shown tremendous potential as cathodes or anodes for various rechargeable batteries...

    Article 25 August 2023
  9. Molecular dynamics simulations as a guide for modulating small molecule aggregation

    Small colloidally aggregating molecules (SCAMs) can be problematic for biological assays in drug discovery campaigns. However, the self-associating...

    Azam Nesabi, Jas Kalayan, ... Richard A. Bryce in Journal of Computer-Aided Molecular Design
    Article Open access 12 March 2024
  10. Selecting small molecule DNA aptamers with significant conformational changes for constructing transcriptional switches and biosensors

    Small molecule aptamers discovered by traditional selection methods usually lack conformational changes upon target binding. This limits the use of...

    Shaobin Guo, **g**g Lin, ... Huanghao Yang in Science China Chemistry
    Article 17 April 2023
  11. Small molecule approaches to targeting RNA

    The development of innovative methodologies to identify RNA binders has attracted enormous attention in chemical biology and drug discovery. Although...

    Sandra Kovachka, Marc Panosetti, ... Maria Duca in Nature Reviews Chemistry
    Article 26 January 2024
  12. Prediction method of pharmacokinetic parameters of small molecule drugs based on GCN network model

    Context

    Accurately predicting plasma protein binding rate (PPBR) and oral bioavailability (OBA) helps to better reveal the absorption and distribution...

    Zhihua Yang, Ying Wang, ... Wenhua Zhan in Journal of Molecular Modeling
    Article 12 July 2024
  13. Small molecule agonist of mitochondrial fusion repairs mitochondrial dysfunction

    Membrane dynamics are important to the integrity and function of mitochondria. Defective mitochondrial fusion underlies the pathogenesis of multiple...

    Yingjie Guo, Huan Zhang, ... Quan Chen in Nature Chemical Biology
    Article 12 January 2023
  14. A novel polymer enabled by polymerized small molecule strategy for tumor photothermal and photodynamic therapy

    Photothermal therapy (PTT) and photodynamic therapy (PDT) are effective method for tumor treatment. However, the limited variety and quantity of...

    **n **e, Ke Wang, ... **ao-Jian Han in Journal of Nanobiotechnology
    Article Open access 20 December 2023
  15. Profiling dynamic RNA–protein interactions using small-molecule-induced RNA editing

    RNA-binding proteins (RBPs) play an important role in biology, and characterizing dynamic RNA–protein interactions is essential for understanding RBP...

    Kyung W. Seo, Ralph E. Kleiner in Nature Chemical Biology
    Article 22 June 2023
  16. Molecular dynamics study on micelle-small molecule interactions: develo** a strategy for an extensive comparison

    Theoretical predictions of the solubilizing capacity of micelles and vesicles present in intestinal fluid are important for the development of new...

    Aleksei Kabedev, Christel A. S. Bergström, Per Larsson in Journal of Computer-Aided Molecular Design
    Article Open access 16 December 2023
  17. Small-molecule inhibition of the archetypal UbiB protein COQ8

    Small-molecule tools have enabled mechanistic investigations and therapeutic targeting of the protein kinase-like (PKL) superfamily. However, such...

    Nathan H. Murray, Christopher R. M. Asquith, ... David J. Pagliarini in Nature Chemical Biology
    Article 27 October 2022
  18. A small molecule inhibitor prevents gut bacterial genotoxin production

    The human gut bacterial genotoxin colibactin is a possible key driver of colorectal cancer (CRC) development. Understanding colibactin’s biological...

    Matthew R. Volpe, José A. Velilla, ... Emily P. Balskus in Nature Chemical Biology
    Article Open access 17 October 2022
  19. Global profiling of functional histidines in live cells using small-molecule photosensitizer and chemical probe relay labelling

    Recent advances in chemical proteomics have focused on develo** chemical probes that react with nucleophilic amino acid residues. Although...

    Yansheng Zhai, **nyu Zhang, ... Gang Li in Nature Chemistry
    Article 04 June 2024
  20. Expanding the search for small-molecule antibacterials by multidimensional profiling

    New techniques for systematic profiling of small-molecule effects can enhance traditional growth inhibition screens for antibiotic discovery and...

    Karin Ortmayr, Roberto de la Cruz Moreno, Mattia Zampieri in Nature Chemical Biology
    Article 23 May 2022
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