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Mammalian PIWI–piRNA–target complexes reveal features for broad and efficient target silencing

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  1. Article

    Open Access

    A novel LGALS1-depended and immune-associated fatty acid metabolism risk model in acute myeloid leukemia stem cells

    Leukemia stem cells (LSCs) are recognized as the root cause of leukemia initiation, relapse, and drug resistance. Lipid species are highly abundant and essential component of human cells, which often changed i...

    Huanhuan Qin, Meixi Peng, **gsong Cheng, Zhenyu Wang, Yinghui Cui in Cell Death & Disease (2024)

  2. Article

    Open Access

    Whole-genome sequencing reveals genomic diversity and selection signatures in **a’nan cattle

    The crossbreeding of specialized beef cattle breeds with Chinese indigenous cattle is a common method of genetic improvement. **a’nan cattle, a crossbreed of Charolais and Nanyang cattle, is China’s first spec...

    **ngya Song, Zhi Yao, Zi**g Zhang, Shijie Lyu, Ningbo Chen, **ngshan Qi in BMC Genomics (2024)

  3. Article

    Open Access

    Castration alters the ileum microbiota of Holstein bulls and promotes beef flavor compounds

    In the beef industry, bull calves are usually castrated to improve flavor and meat quality; however, this can reduce their growth and slaughter performance. The gut microbiota is known to exert a significant i...

    **** Shi, Zemin Li, Li Jia, Yue Ma, Yongliang Huang, Pengjia He, Tao Ran in BMC Genomics (2024)

  4. Article

    Open Access

    Correction: Transcriptomics and metabolomics of blood, urine and ovarian follicular fuid of yak at induced estrus stage

    Huangqing Zhao, Yongzhen Huang, Shi Shu, Guowen Wang, Changqi Fu in BMC Genomics (2024)

  5. Article

    Open Access

    Transcriptomics and metabolomics of blood, urine and ovarian follicular fluid of yak at induced estrus stage

    To gain a deeper understanding of the metabolic differences within and outside the body, as well as changes in transcription levels following estrus in yaks, we conducted transcriptome and metabolome analyses ...

    Huangqing Zhao, Yongzhen Huang, Shi Shu, Guowen Wang, Changqi Fu in BMC Genomics (2024)

  6. Article

    Open Access

    Development of a coding SNP panel for tracking the origin of whole-exome sequencing samples

    Whole-exome sequencing (WES) is widely used to diagnose complex genetic diseases and rare conditions. The implementation of a robust and effective quality control system for sample identification and tracking ...

    Yong Huang, Yuanyuan **ao, Shengqiu Qu, Jiaming Xue, Lin Zhang, Li Wang in BMC Genomics (2024)

  7. Article

    Open Access

    N6-methyladenosine demethylase FTO regulates synaptic and cognitive impairment by destabilizing PTEN mRNA in hypoxic-ischemic neonatal rats

    Hypoxic-ischemic brain damage (HIBD) can result in significant global rates of neonatal death or permanent neurological disability. N6-methyladenosine (m6A) modification of RNA influences fundamental aspects o...

    Jianhui Deng, Yanling Liao, Jianghu Chen, Andi Chen, Shuyan Wu in Cell Death & Disease (2023)

  8. Article

    Open Access

    Selective activation of AKAP150/TRPV1 in ventrolateral periaqueductal gray GABAergic neurons facilitates conditioned place aversion in male mice

    Aversion refers to feelings of strong dislike or avoidance toward particular stimuli or situations. Aversion can be caused by pain stimuli and has a long-term negative impact on physical and mental health. Ave...

    **aohui Bai, Kun Zhang, Chaopeng Ou, Bilin Nie, Jianxing Zhang in Communications Biology (2023)

  9. Article

    Open Access

    Genetic diversity and signatures of selection in BoHuai goat revealed by whole-genome sequencing

    Cross breeding is an important way to improve livestock performance. As an important livestock and poultry resource in Henan Province of China, Bohuai goat was formed by crossing Boer goat and Huai goat. After...

    Zhi Yao, Shun** Zhang, **anwei Wang, Yingwei Guo, **aoling **n in BMC Genomics (2023)

  10. Article

    Open Access

    Ferroptosis, pyroptosis and necroptosis in acute respiratory distress syndrome

    Acute respiratory distress syndrome (ARDS) is an acute and uncontrolled pulmonary inflammation caused by various insults. Cell death is a critical mechanism in the pathogenesis of ARDS. Ferroptosis, a novel fo...

    Yongxin Zheng, Yongbo Huang, Yonghao Xu, Ling Sang, **aoqing Liu in Cell Death Discovery (2023)

  11. Article

    Open Access

    MIIP functions as a novel ligand for ITGB3 to inhibit angiogenesis and tumorigenesis of triple-negative breast cancer

    Migration and invasion inhibitory protein (MIIP) has been identified as a tumor suppressor in various cancer types. Although MIIP is reported to exert tumor suppressive functions by repressing proliferation an...

    Yu**g Gao, Yujie Fang, Yongli Huang, Rui Ma, **xi Chen, Fang Wang in Cell Death & Disease (2022)

  12. Article

    Open Access

    Targeting HIC1/TGF-β axis-shaped prostate cancer microenvironment restrains its progression

    Prostate cancer (PCa) is a malignant tumor that seriously threatens men’s health worldwide. Recently, stromal cells in the tumor microenvironment (TME) have been reported to contribute to the progression of PC...

    Tianqi Wu, Wenfeng Wang, Guohai Shi, Mingang Hao, Yingying Wang in Cell Death & Disease (2022)

  13. Article

    Open Access

    Transcriptomic analysis of tuberous root in two sweet potato varieties reveals the important genes and regulatory pathways in tuberous root development

    Tuberous root formation and development is a complex process in sweet potato, which is regulated by multiple genes and environmental factors. However, the regulatory mechanism of tuberous root development is u...

    Zhaoqin Cai, Zhipeng Cai, **gli Huang, Aiqin Wang, Aaron Ntambiyukuri in BMC Genomics (2022)

  14. Article

    Open Access

    Identification of hub genes and pathways in colitis-associated colon cancer by integrated bioinformatic analysis

    Colitis-associated colon cancer (CAC) patients have a younger age of onset, more multiple lesions and invasive tumors than sporadic colon cancer patients. Early detection of CAC using endoscopy is challenging,...

    Yongming Huang, **aoyuan Zhang, PengWang, Yansen Li, Jie Yao in BMC Genomic Data (2022)

  15. Article

    Open Access

    Assessing genomic diversity and signatures of selection in Pinan cattle using whole-genome sequencing data

    Crossbreeding is an important way to improve production beef cattle performance. Pinan cattle is a new hybrid cattle obtained from crossing Piedmontese bulls with Nanyang cows. After more than 30 years of cros...

    Shun** Zhang, Zhi Yao, **nmiao Li, Zi**g Zhang, **an Liu, Peng Yang in BMC Genomics (2022)

  16. Article

    Open Access

    PHF13 epigenetically activates TGFβ driven epithelial to mesenchymal transition

    Epigenetic alteration is a pivotal factor in tumor metastasis. PHD finger protein 13 (PHF13) is a recently identified epigenetic reader of H3K4me2/3 that functions as a transcriptional co-regulator. In this st...

    Yating Sun, Dan Li, Hongmei Liu, Yongye Huang, Fanyu Meng in Cell Death & Disease (2022)

  17. Article

    Open Access

    RNF12 is regulated by AKT phosphorylation and promotes TGF-β driven breast cancer metastasis

    Transforming growth factor-β (TGF-β) acts as a pro-metastatic factor in advanced breast cancer. RNF12, an E3 ubiquitin ligase, stimulates TGF-β signaling by binding to the inhibitory SMAD7 and inducing its pro...

    Yongsheng Huang, Sijia Liu, Mengjie Shan, Sophie C. Hagenaars in Cell Death & Disease (2022)

  18. Article

    Open Access

    LncRNA RP11-89 facilitates tumorigenesis and ferroptosis resistance through PROM2-activated iron export by sponging miR-129-5p in bladder cancer

    Long non-coding RNAs (lncRNAs) act as important regulators of tumorigenesis and development in bladder cancer. However, the underlying molecular mechanisms remain elusive. We previously identified a novel lncR...

    Wenjie Luo, Jun Wang, Wenhao Xu, Chunguang Ma, Fangning Wan in Cell Death & Disease (2021)

  19. Article

    Open Access

    GIPC2 is an endocrine-specific tumor suppressor gene for both sporadic and hereditary tumors of RET- and SDHB-, but not VHL-associated clusters of pheochromocytoma/paraganglioma

    Pheochromocytoma/paraganglioma (PPGL) is an endocrine tumor of the chromaffin cells in the adrenal medulla or the paraganglia. Currently, about 70% of PPGLs can be explained by germline or somatic mutations in...

    Yeqing Dong, Yongsheng Huang, Chengyan Fan, Liang Wang, Ran Zhang in Cell Death & Disease (2021)

  20. Article

    Open Access

    Transcriptome-wide study revealed m6A regulation of embryonic muscle development in Dingan goose (Anser cygnoides orientalis)

    The number of myofiber is determined during the embryonic stage and does not increase during the postnatal period for birds, including goose. Thus, muscle production of adult goose is pre-determined during emb...

    Tieshan Xu, Zijie Xu, Lizhi Lu, Tao Zeng, Lihong Gu, Yongzhen Huang in BMC Genomics (2021)

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