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  1. Article

    Open Access

    Recurrent neural network for predicting absence of heterozygosity from low pass WGS with ultra-low depth

    The absence of heterozygosity (AOH) is a kind of genomic change characterized by a long contiguous region of homozygous alleles in a chromosome, which may cause human genetic disorders. However, no method of l...

    Fei Tang, Zhonghua Wang, Yan Sun, Linlin Fan, Yun Yang, Xueqin Guo in BMC Genomics (2024)

  2. Article

    Open Access

    Identification and characterization of whole blood gene expression and splicing quantitative trait loci during early to mid-lactation of dairy cattle

    Characterization of regulatory variants (e.g., gene expression quantitative trait loci, eQTL; gene splicing QTL, sQTL) is crucial for biologically interpreting molecular mechanisms underlying loci associated w...

    Yongjie Tang, **ning Zhang, Wenlong Li, Xueqin Liu, Siqian Chen, Siyuan Mi in BMC Genomics (2024)

  3. Article

    Open Access

    Genome-wide identification and expression pattern analysis of the Aux/IAA (auxin/indole-3-acetic acid) gene family in alfalfa (Medicago sativa) and the potential functions under drought stress

    Auxin/induced-3-acetic acid (Aux/IAA) is an important plant hormone that affects plant growth and resistance to abiotic stresses. Drought stress is a vital factor in reducing plant biomass yield and production...

    **qing Zhang, Shuxia Li, Xueqin Gao, Yaling Liu, BingZhe Fu in BMC Genomics (2024)

  4. Article

    Open Access

    Identification of genomic characteristics and selective signals in Guizhou black goat

    Guizhou black goat is one of the indigenous black goat breeds in the southwest region of Guizhou, China, which is an ordinary goat for mutton production. They are characterized by moderate body size, black coa...

    Lingle Chang, Yundi Zheng, Sheng Li, ** Niu, Shihui Huang, Qingmeng Long in BMC Genomics (2024)

  5. Article

    Open Access

    Genome-wide identification of B-box zinc finger (BBX) gene family in Medicago sativa and their roles in abiotic stress responses

    B-box (BBX) family is a class of zinc finger transcription factors (TFs) that play essential roles in regulating plant growth, development, as well as abiotic stress. However, no systematic analysis of BBX genes ...

    Shuxia Li, Shuaiqi Guo, Xueqin Gao, **aotong Wang, Yaling Liu, **g Wang in BMC Genomics (2024)

  6. Article

    Open Access

    Genome-wide association study reveals serovar-associated genetic loci in Riemerella anatipestifer

    The disease caused by Riemerella anatipestifer (R. anatipestifer, RA) results in large economic losses to the global duck industry every year. Serovar-related genomic variation, such as the O-antigen and capsular...

    Zhishuang Yang, Xueqin Yang, Mingshu Wang, Renyong Jia, Shun Chen in BMC Genomics (2024)

  7. Article

    Open Access

    Alterations of the gut microbiota in patients with postherpetic neuralgia

    Postherpetic neuralgia (PHN) is a prevalent, intricate, and intractable form of neuropathic pain. The available evidence indicates that alterations in the gut microbiota are significant environmental determina...

    Bo Jiao, Xueqin Cao, Caixia Zhang, Wencui Zhang, Shangchen Yu, Mi Zhang in AMB Express (2023)

  8. Article

    Open Access

    Analysis of acid-tolerance mechanism based on membrane microdomains in Saccharomyces cerevisiae

    Saccharomyces cerevisiae has been used in the biosynthesis of acid products such as organic acids owing to its acid tolerance. Improving the acid tolerance of S. cerevisiae is beneficial for expanding its applica...

    Xueqin Lv, Ke **, Yu Yi, Lingang Song, **ang **u, Yanfeng Liu in Microbial Cell Factories (2023)

  9. No Access

    Article

    Bacterial diversity in water from **feng Hot Spring in China

    The **feng Hot Spring is one of the eight largest hot springs in China, which is rich in radon gas and sulphur in karst scenery. Little is known about the microbiota structure in the spring. The water was coll...

    Lijuan Wu, Hong Long, Shihui Huang, ** Niu, Sheng Li in Brazilian Journal of Microbiology (2023)

  10. Article

    Open Access

    Molecular regulatory mechanism of key LncRNAs in subclinical mastitic cows with folic acid supplementation

    Folic acid is a water-soluble B vitamin (B9), which is closely related to the body’s immune and other metabolic pathways. The folic acid synthesized by rumen microbes has been unable to meet the needs of high-...

    Xueqin Liu, Siyuan Mi, Wenlong Li, **ning Zhang, Serafino M. A. Augustino in BMC Genomics (2023)

  11. No Access

    Article

    Mesoporous silica stabilized Cu-Fe bimetallic nanozymes for total antioxidant capacity assay of fruit foods

    Total antioxidant capacity (TAC) is currently considered as a vital indicator of food quality in antioxidant ability and attracts much attention for human healthcare. It is thus of great significance to realiz...

    Xueqin Wang, Xuyang Chen, Junyan Liu, Haizhen Tao in Applied Microbiology and Biotechnology (2023)

  12. No Access

    Article

    Combinatorial metabolic engineering enables high yield production of α-arbutin from sucrose by biocatalysis

    α-Arbutin has been widely used as a skin-whitening ingredient. Previously, we successfully produced α-arbutin via whole-cell biocatalysis and found that the conversion rate of sucrose to α-arbutin was low (~45...

    Qi Zhou, Yaokang Wu, Jieying Deng, Yanfeng Liu in Applied Microbiology and Biotechnology (2023)

  13. Article

    Open Access

    Engineered Bacillus subtilis for the de novo production of 2′-fucosyllactose

    The most abundant human milk oligosaccharide in breast milk, 2′-fucosyllactose (2′-FL), has been approved as an additive to infant formula due to its multifarious nutraceutical and pharmaceutical functions in ...

    Quanwei Zhang, Zhenmin Liu, Hongzhi **a, Ziyang Huang in Microbial Cell Factories (2022)

  14. Article

    Open Access

    Compartmentalization and transporter engineering strategies for terpenoid synthesis

    Microbial cell factories for terpenoid synthesis form a less expensive and more environment-friendly approach than chemical synthesis and extraction, and are thus being regarded as mainstream research recently...

    Ke **, Hongzhi **a, Yanfeng Liu, Jianghua Li, Guocheng Du in Microbial Cell Factories (2022)

  15. Article

    Effects of N-Linked Glycan on Lassa Virus Envelope Glycoprotein Cleavage, Infectivity, and Immune Response

    Lassa virus (LASV) belongs to the Mammarenavirus genus (family Arenaviridae) and causes severe hemorrhagic fever in humans. The glycoprotein complex (GPC) contains eleven N-linked glycans that play essential role...

    Xueqin Zhu, Yang Liu, Jiao Guo, Junyuan Cao, Zonglin Wang, Gengfu **ao in Virologica Sinica (2021)

  16. No Access

    Article

    Expression profiles of genes involved in fatty acid and lipid biosynthesis in develo** seeds of Paeonia ostii

    Paeonia ostii seeds were identified as novel sources of edible plant oil with a high proportion of α-linolenic acid, a type of n-3 fatty acid with many health benefits. Due to the unreliability of seed oil conten...

    Chaoqiong Li, Lizong Hu, Beibei Que, Yueran Hu, Yuanyuan Guo in Genes & Genomics (2021)

  17. No Access

    Article

    Metabolic engineering for the synthesis of steviol glycosides: current status and future prospects

    With the pursuit of natural non-calorie sweeteners, steviol glycosides (SGs) have become one of the most popular natural sweeteners in the market. The SGs in Stevia are a mixture of SGs synthesized from steviol (...

    Xuan Zhou, Mengyue Gong, Xueqin Lv, Yanfeng Liu in Applied Microbiology and Biotechnology (2021)

  18. Article

    Open Access

    Design of a novel antimicrobial peptide 1018M targeted ppGpp to inhibit MRSA biofilm formation

    Methicillin-resistant staphylococcus aureus (MRSA) and its biofilm infection were considered as one of the main international health issues. There are still many challenges for treatment using traditional antibio...

    Zhou Jiale, Jiao Jian, Tan **nyi, **e Haoji, Huang Xueqin, Wang **ao in AMB Express (2021)

  19. Article

    Open Access

    Visual multiple cross displacement amplification for the rapid identification of S. agalactiae immediately from vaginal and rectal swabs

    Streptococcus agalactiae (S. agalactiae) is an important pathogen that can lead to neonatus and mother infection. The current existing techniques for the identification of S. agalactiae are limited by accuracy, s...

    Xueqin Cheng, Zhiqian Dou, **g Yang, Dexi Liu, Yulong Gu, Fenglin Cai in AMB Express (2021)

  20. Article

    Open Access

    Pretreatment with probiotics ameliorate gut health and necrotic enteritis in broiler chickens, a substitute to antibiotics

    Necrotic enteritis (NE) is being considered as one of the most important intestinal diseases in the recent poultry production systems, which causes huge economic losses globally. NE is caused by Clostridium perfr...

    Danish Sharafat Rajput, Dong Zeng, Abdul Khalique, Samia Sharafat Rajput in AMB Express (2020)

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