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Article
Petabase-scale sequence alignment catalyses viral discovery
Public databases contain a planetary collection of nucleic acid sequences, but their systematic exploration has been inhibited by a lack of efficient methods for searching this corpus, which (at the time of wr...
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Article
Open AccessA geographically-diverse collection of 418 human gut microbiome pathway genome databases
Advances in high-throughput sequencing are resha** how we perceive microbial communities inhabiting the human body, with implications for therapeutic interventions. Several large-scale datasets derived from ...
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Article
Open AccessMetabolic pathways for the whole community
A convergence of high-throughput sequencing and computational power is transforming biology into information science. Despite these technological advances, converting bits and bytes of sequence information int...
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Article
Open AccessA systematic comparison of the MetaCyc and KEGG pathway databases
The MetaCyc and KEGG projects have developed large metabolic pathway databases that are used for a variety of applications including genome analysis and metabolic engineering. We present a comparison of the co...
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Protocol
Data Mining in the MetaCyc Family of Pathway Databases
Pathway databases collect the bioreactions and molecular interactions that define the processes of life. The MetaCyc family of pathway databases consists of thousands of databases that were derived through com...
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Article
Beyond the genome (BTG) is a (PGDB) pathway genome database: HumanCyc
