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  1. Article

    Open Access

    Elevated nuclear TDP-43 induces constitutive exon skip**

    Cytoplasmic inclusions and loss of nuclear TDP-43 are key pathological features found in several neurodegenerative disorders, suggesting both gain- and loss-of-function mechanisms of disease. To study gain-of-...

    Rogger P. Carmen-Orozco, William Tsao, Yingzhi Ye in Molecular Neurodegeneration (2024)

  2. Article

    Open Access

    Intercellular communication atlas reveals Oprm1 as a neuroprotective factor for retinal ganglion cells

    Previous studies of neuronal survival have primarily focused on identifying intrinsic mechanisms controlling the process. This study explored how intercellular communication contributes to retinal ganglion cel...

    Cheng Qian, Ying **n, Cheng Qi, Hui Wang, Bryan C. Dong in Nature Communications (2024)

  3. Article

    Open Access

    Common and divergent gene regulatory networks control injury-induced and developmental neurogenesis in zebrafish retina

    Following acute retinal damage, zebrafish possess the ability to regenerate all neuronal subtypes through Müller glia (MG) reprogramming and asymmetric cell division that produces a multipotent Müller glia-der...

    Pin Lyu, Maria Iribarne, Dmitri Serjanov, Yijie Zhai, Thanh Hoang in Nature Communications (2023)

  4. Article

    Open Access

    A clock-dependent brake for rhythmic arousal in the dorsomedial hypothalamus

    Circadian clocks generate rhythms of arousal, but the underlying molecular and cellular mechanisms remain unclear. In Drosophila, the clock output molecule WIDE AWAKE (WAKE) labels rhythmic neural networks and cy...

    Qiang Liu, Benjamin J. Bell, Dong Won Kim, Sang Soo Lee in Nature Communications (2023)

  5. No Access

    Article

    Ptbp1 deletion does not induce astrocyte-to-neuron conversion

    Thanh Hoang, Dong Won Kim, Haley Appel, Manabu Ozawa, Sika Zheng, Juhyun Kim in Nature (2023)

  6. Article

    Open Access

    Amyloid-beta and tau pathologies act synergistically to induce novel disease stage-specific microglia subtypes

    Amongst risk alleles associated with late-onset Alzheimer’s disease (AD), those that converged on the regulation of microglia activity have emerged as central to disease progression. Yet, how canonical amyloid...

    Dong Won Kim, Kevin J. Tu, Alice Wei, Ashley J. Lau in Molecular Neurodegeneration (2022)

  7. Article

    Open Access

    Cell-specific regulation of gene expression using splicing-dependent frameshifting

    Precise and reliable cell-specific gene delivery remains technically challenging. Here we report a splicing-based approach for controlling gene expression whereby separate translational reading frames are coup...

    Jonathan P. Ling, Alexei M. Bygrave, Clayton P. Santiago in Nature Communications (2022)

  8. Article

    Open Access

    In vivo base editing rescues cone photoreceptors in a mouse model of early-onset inherited retinal degeneration

    Leber congenital amaurosis (LCA) is the most common cause of inherited retinal degeneration in children. LCA patients with RPE65 mutations show accelerated cone photoreceptor dysfunction and death, resulting in e...

    Elliot H. Choi, Susie Suh, Andrzej T. Foik, Henri Leinonen in Nature Communications (2022)

  9. Article

    Open Access

    Author Correction: The cellular and molecular landscape of hypothalamic patterning and differentiation from embryonic to late postnatal development

    Dong Won Kim, Parris Whitney Washington, Zoe Qianyi Wang in Nature Communications (2022)

  10. Article

    Open Access

    Author Correction: A potential role for somatostatin signaling in regulating retinal neurogenesis

    Kurt Weir, Dong Won Kim, Seth Blackshaw in Scientific Reports (2021)

  11. Article

    Open Access

    A potential role for somatostatin signaling in regulating retinal neurogenesis

    Neuropeptides have been reported to regulate progenitor proliferation and neurogenesis in the central nervous system. However, these studies have typically been conducted using pharmacological agents in ex viv...

    Kurt Weir, Dong Won Kim, Seth Blackshaw in Scientific Reports (2021)

  12. Article

    Open Access

    Temperature and species-dependent regulation of browning in retrobulbar fat

    Retrobulbar fat deposits surround the posterior retina and optic nerve head, but their function and origin are obscure. We report that mouse retrobulbar fat is a neural crest-derived tissue histologically and ...

    Fatemeh Rajaii, Dong Won Kim, Jianbo Pan, Nicholas R. Mahoney in Scientific Reports (2021)

  13. Article

    Open Access

    Gene regulatory networks controlling differentiation, survival, and diversification of hypothalamic Lhx6-expressing GABAergic neurons

    GABAergic neurons of the hypothalamus regulate many innate behaviors, but little is known about the mechanisms that control their development. We previously identified hypothalamic neurons that express the LIM...

    Dong Won Kim, Kai Liu, Zoe Qianyi Wang, Yi Stephanie Zhang in Communications Biology (2021)

  14. Article

    Open Access

    The cellular and molecular landscape of hypothalamic patterning and differentiation from embryonic to late postnatal development

    The hypothalamus is a central regulator of many innate behaviors essential for survival, but the molecular mechanisms controlling hypothalamic patterning and cell fate specification are poorly understood. To i...

    Dong Won Kim, Parris Whitney Washington, Zoe Qianyi Wang in Nature Communications (2020)

  15. Article

    Open Access

    ASCOT identifies key regulators of neuronal subtype-specific splicing

    Public archives of next-generation sequencing data are growing exponentially, but the difficulty of marshaling this data has led to its underutilization by scientists. Here, we present ASCOT, a resource that u...

    Jonathan P. Ling, Christopher Wilks, Rone Charles in Nature Communications (2020)

  16. No Access

    Book

  17. No Access

    Chapter

    Winding the Clock: Development of Hypothalamic Structures Controlling Biological Timing and Sleep

    The daily cycle of sleep and wake governs all aspects of behavior and is under tight homeostatic regulation. The core circadian oscillator in turn restricts sleep to specific intervals of the solar day. The ne...

    Dong Won Thomas Kim, Seth Blackshaw in Developmental Neuroendocrinology (2020)

  18. Article

    Open Access

    Tissue- and Species-Specific Patterns of RNA metabolism in Post-Mortem Mammalian Retina and Retinal Pigment Epithelium

    Accurate analysis of gene expression in human tissues using RNA sequencing is dependent on the quality of source material. One major source of variation in mRNA quality is post-mortem time. While it is known t...

    Les Kallestad, Seth Blackshaw, Ahmad M. Khalil, Krzysztof Palczewski in Scientific Reports (2019)

  19. Article

    Open Access

    Reactive microglia and IL1β/IL-1R1-signaling mediate neuroprotection in excitotoxin-damaged mouse retina

    Microglia and inflammation have context-specific impacts upon neuronal survival in different models of central nervous system (CNS) disease. Herein, we investigate how inflammatory mediators, including microgl...

    Levi Todd, Isabella Palazzo, Lilianna Suarez, **aoyu Liu in Journal of Neuroinflammation (2019)

  20. Article

    Open Access

    Epigenomic profiling of retinal progenitors reveals LHX2 is required for developmental regulation of open chromatin

    Retinal neurogenesis occurs through partially overlap** temporal windows, driven by concerted actions of transcription factors which, in turn, may contribute to the establishment of divergent genetic program...

    Cristina Zibetti, Sheng Liu, Jun Wan, Jiang Qian, Seth Blackshaw in Communications Biology (2019)

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