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  1. Article

    Open Access

    GRAPES-DD: exploiting decision diagrams for index-driven search in biological graph databases

    Graphs are mathematical structures widely used for expressing relationships among elements when representing biomedical and biological information. On top of these representations, several analyses are perform...

    Nicola Licheri, Vincenzo Bonnici, Marco Beccuti, Rosalba Giugno in BMC Bioinformatics (2021)

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  2. Article

    Open Access

    Sparsely-connected autoencoder (SCA) for single cell RNAseq data mining

    Single-cell RNA sequencing (scRNAseq) is an essential tool to investigate cellular heterogeneity. Thus, it would be of great interest being able to disclose biological information belonging to cell subpopulati...

    Luca Alessandri, Francesca Cordero, Marco Beccuti… in npj Systems Biology and Applications (2021)

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  3. No Access

    Protocol

    Computational Analysis of circRNA Expression Data

    Analysis of circular RNA (circRNA) expression from RNA-Seq data can be performed with different algorithms and analysis pipelines, tools allowing the extraction of heterogeneous information on the expression o...

    Giulio Ferrero, Nicola Licheri, Michele De Bortoli… in RNA Bioinformatics (2021)