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  1. Article

    Open Access

    Single-nucleus multi-omics of Parkinson’s disease reveals a glutamatergic neuronal subtype susceptible to gene dysregulation via alteration of transcriptional networks

    The genetic architecture of Parkinson’s disease (PD) is complex and multiple brain cell subtypes are involved in the neuropathological progression of the disease. Here we aimed to advance our understanding of ...

    E. Keats Shwab, Daniel C. Gingerich, Zhaohui Man in Acta Neuropathologica Communications (2024)

  2. No Access

    Article

    Genome-wide association analyses identify 95 risk loci and provide insights into the neurobiology of post-traumatic stress disorder

    Post-traumatic stress disorder (PTSD) genetics are characterized by lower discoverability than most other psychiatric disorders. The contribution to biological understanding from previous genetic studies has t...

    Caroline M. Nievergelt, Adam X. Maihofer, Elizabeth G. Atkinson in Nature Genetics (2024)

  3. Article

    Open Access

    Posttraumatic stress disorder, trauma, and accelerated biological aging among post-9/11 veterans

    People who experience trauma and develop posttraumatic stress disorder (PTSD) are at increased risk for poor health. One mechanism that could explain this risk is accelerated biological aging, which is associa...

    Kyle J. Bourassa, Melanie E. Garrett, Avshalom Caspi in Translational Psychiatry (2024)

  4. Article

    Open Access

    Integrative single-nucleus multi-omics analysis prioritizes candidate cis and trans regulatory networks and their target genes in Alzheimer’s disease brains

    The genetic underpinnings of late-onset Alzheimer’s disease (LOAD) are yet to be fully elucidated. Although numerous LOAD-associated loci have been discovered, the causal variants and their target genes remain...

    Julia Gamache, Daniel Gingerich, E. Keats Shwab, Julio Barrera in Cell & Bioscience (2023)

  5. Article

    Open Access

    Multi-ancestry transcriptome-wide association analyses yield insights into tobacco use biology and drug repurposing

    Most transcriptome-wide association studies (TWASs) so far focus on European ancestry and lack diversity. To overcome this limitation, we aggregated genome-wide association study (GWAS) summary statistics, who...

    Fang Chen, **ngyan Wang, Seon-Kyeong Jang, Bryan C. Quach in Nature Genetics (2023)

  6. Article

    Open Access

    Genetic diversity fuels gene discovery for tobacco and alcohol use

    Tobacco and alcohol use are heritable behaviours associated with 15% and 5.3% of worldwide deaths, respectively, due largely to broad increased risk for disease and injury14. These substances are used across the...

    Gretchen R. B. Saunders, **ngyan Wang, Fang Chen, Seon-Kyeong Jang, Mengzhen Liu in Nature (2022)

  7. No Access

    Article

    Rare genetic variants explain missing heritability in smoking

    Common genetic variants explain less variation in complex phenotypes than inferred from family-based studies, and there is a debate on the source of this ‘missing heritability’. We investigated the contributio...

    Seon-Kyeong Jang, Luke Evans, Allison Fialkowski, Donna K. Arnett in Nature Human Behaviour (2022)

  8. No Access

    Article

    A genome-wide association study of suicide attempts in the million veterans program identifies evidence of pan-ancestry and ancestry-specific risk loci

    To identify pan-ancestry and ancestry-specific loci associated with attempting suicide among veterans, we conducted a genome-wide association study (GWAS) of suicide attempts within a large, multi-ancestry coh...

    Nathan A. Kimbrel, Allison E. Ashley-Koch, Xue J. Qin in Molecular Psychiatry (2022)

  9. Article

    Open Access

    Trauma and posttraumatic stress disorder modulate polygenic predictors of hippocampal and amygdala volume

    The volume of subcortical structures represents a reliable, quantitative, and objective phenotype that captures genetic effects, environmental effects such as trauma, and disease effects such as posttraumatic ...

    Yuanchao Zheng, Melanie E. Garrett, Delin Sun in Translational Psychiatry (2021)

  10. Article

    Open Access

    Sex dependent glial-specific changes in the chromatin accessibility landscape in late-onset Alzheimer’s disease brains

    In the post-GWAS era, there is an unmet need to decode the underpinning genetic etiologies of late-onset Alzheimer’s disease (LOAD) and translate the associations to causation.

    Julio Barrera, Lingyun Song, Julia E. Gamache in Molecular Neurodegeneration (2021)

  11. No Access

    Article

    Cell-type-specific effects of genetic variation on chromatin accessibility during human neuronal differentiation

    Common genetic risk for neuropsychiatric disorders is enriched in regulatory elements active during cortical neurogenesis. However, it remains poorly understood as to how these variants influence gene regulati...

    Dan Liang, Angela L. Elwell, Nil Aygün, Oleh Krupa, Justin M. Wolter in Nature Neuroscience (2021)

  12. Article

    Open Access

    Epigenome-wide meta-analysis of PTSD across 10 military and civilian cohorts identifies methylation changes in AHRR

    Epigenetic differences may help to distinguish between PTSD cases and trauma-exposed controls. Here, we describe the results of the largest DNA methylation meta-analysis of PTSD to date. Ten cohorts, military ...

    Alicia K. Smith, Andrew Ratanatharathorn, Adam X. Maihofer in Nature Communications (2020)

  13. Article

    Open Access

    PCM1 is necessary for focal ciliary integrity and is a candidate for severe schizophrenia

    The neuronal primary cilium and centriolar satellites have functions in neurogenesis, but little is known about their roles in the postnatal brain. We show that ablation of pericentriolar material 1 in the mou...

    Tanner O. Monroe, Melanie E. Garrett, Maria Kousi in Nature Communications (2020)

  14. Article

    Open Access

    An epigenome-wide association study of posttraumatic stress disorder in US veterans implicates several new DNA methylation loci

    Previous studies using candidate gene and genome-wide approaches have identified epigenetic changes in DNA methylation (DNAm) associated with posttraumatic stress disorder (PTSD).

    Mark W. Logue, Mark W. Miller, Erika J. Wolf, Bertrand Russ Huber in Clinical Epigenetics (2020)

  15. Article

    Open Access

    International meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci

    The risk of posttraumatic stress disorder (PTSD) following trauma is heritable, but robust common variants have yet to be identified. In a multi-ethnic cohort including over 30,000 PTSD cases and 170,000 contr...

    Caroline M. Nievergelt, Adam X. Maihofer, Torsten Klengel in Nature Communications (2019)

  16. Article

    Open Access

    Evaluation of chromatin accessibility in prefrontal cortex of individuals with schizophrenia

    Schizophrenia genome-wide association studies have identified >150 regions of the genome associated with disease risk, yet there is little evidence that coding mutations contribute to this disorder. To explore...

    Julien Bryois, Melanie E. Garrett, Lingyun Song, Alexias Safi in Nature Communications (2018)

  17. Article

    Open Access

    Genome-wide association study of subcortical brain volume in PTSD cases and trauma-exposed controls

    Depending on the traumatic event, a significant fraction of trauma survivors subsequently develop PTSD. The additional variability in PTSD risk is expected to arise from genetic susceptibility. Unfortunately, ...

    Rajendra A. Morey, Sarah L. Davis, Melanie E. Garrett in Translational Psychiatry (2017)

  18. Article

    Open Access

    Joint eQTL assessment of whole blood and dura mater tissue from individuals with Chiari type I malformation

    Expression quantitative trait loci (eQTL) play an important role in the regulation of gene expression. Gene expression levels and eQTLs are expected to vary from tissue to tissue, and therefore multi-tissue an...

    Eric F Lock, Karen L Soldano, Melanie E Garrett, Heidi Cope in BMC Genomics (2015)

  19. No Access

    Article

    Interactions Between Genotype and Depressive Symptoms on Obesity

    Depression and Genetic variation in serotonin and monoamine transmission have both been associated with body mass index (BMI), but their interaction effects are not well understood. We examined the interaction...

    Bernard F. Fuemmeler, Tanya Agurs-Collins, F. Joseph McClernon in Behavior Genetics (2009)