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  1. Article

    Open Access

    Data-driven recombination detection in viral genomes

    Recombination is a key molecular mechanism for the evolution and adaptation of viruses. The first recombinant SARS-CoV-2 genomes were recognized in 2021; as of today, more than ninety SARS-CoV-2 lineages are d...

    Tommaso Alfonsi, Anna Bernasconi, Matteo Chiara, Stefano Ceri in Nature Communications (2024)

  2. Article

    Open Access

    Two novel fish paralogs provide insights into the Rid family of imine deaminases active in pre-empting enamine/imine metabolic damage

    Reactive Intermediate Deaminase (Rid) protein superfamily includes eight families among which the RidA is conserved in all domains of life. RidA proteins accelerate the deamination of the reactive 2-aminoacryl...

    Stefania Digiovanni, Cristina Visentin, Genny Degani in Scientific Reports (2020)

  3. Article

    Open Access

    No metagenomic evidence of tumorigenic viruses in cancers from a selected cohort of immunosuppressed subjects

    The possible existence of yet undiscovered human tumorigenic viruses is still under scrutiny. The development of large-scale sequencing technologies, coupled with bioinformatics techniques for the characteriza...

    Nunzia Passaro, Andrea Casagrande, Matteo Chiara, Bruno Fosso in Scientific Reports (2019)

  4. Article

    Open Access

    Whole transcriptome profiling of Late-Onset Alzheimer’s Disease patients provides insights into the molecular changes involved in the disease

    Alzheimer’s Disease (AD) is the most common cause of dementia affecting the elderly population worldwide. We have performed a comprehensive transcriptome profiling of Late-Onset AD (LOAD) patients using second...

    Anita Annese, Caterina Manzari, Claudia Lionetti, Ernesto Picardi in Scientific Reports (2018)

  5. Article

    Open Access

    Massive transcriptome sequencing of human spinal cord tissues provides new insights into motor neuron degeneration in ALS

    ALS is a devastating and debilitating human disease characterized by the progressive death of upper and lower motor neurons. Although much effort has been made to elucidate molecular determinants underlying th...

    Anna Maria D’Erchia, Angela Gallo, Caterina Manzari, Susanna Raho in Scientific Reports (2017)