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  1. Article

    Open Access

    The pancancer overexpressed NFYC Antisense 1 controls cell cycle mitotic progression through in cis and in trans modes of action

    Antisense RNAs (asRNAs) represent an underappreciated yet crucial layer of gene expression regulation. Generally thought to modulate their sense genes in cis through sequence complementarity or their act of trans...

    Cecilia Pandini, Giulia Pagani, Martina Tassinari, Emanuele Vitale in Cell Death & Disease (2024)

  2. Article

    Open Access

    HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2

    Accurate and timely monitoring of the evolution of SARS-CoV-2 is crucial for identifying and tracking potentially more transmissible/virulent viral variants, and implement mitigation strategies to limit their ...

    Matteo Chiara, David S. Horner, Erika Ferrandi, Carmela Gissi in Communications Biology (2023)

  3. Article

    Open Access

    Accurate detection and quantification of SARS-CoV-2 genomic and subgenomic mRNAs by ddPCR and meta-transcriptomics analysis

    SARS-CoV-2 replication requires the synthesis of a set of structural proteins expressed through discontinuous transcription of ten subgenomic mRNAs (sgmRNAs). Here, we have fine-tuned droplet digital PCR (ddPC...

    Annarita Oranger, Caterina Manzari, Matteo Chiara in Communications Biology (2021)

  4. Article

    Open Access

    CoVaCS: a consensus variant calling system

    The advent and ongoing development of next generation sequencing technologies (NGS) has led to a rapid increase in the rate of human genome re-sequencing data, paving the way for personalized genomics and prec...

    Matteo Chiara, Silvia Gioiosa, Giovanni Chillemi, Mattia D’Antonio in BMC Genomics (2018)

  5. Article

    Open Access

    A-GAME: improving the assembly of pooled functional metagenomics sequence data

    Expression screening of environmental DNA (eDNA) libraries is a popular approach for the identification and characterization of novel microbial enzymes with promising biotechnological properties. In such “func...

    Matteo Chiara, Antonio Placido, Ernesto Picardi, Luigi Ruggiero Ceci in BMC Genomics (2018)