4 Result(s)

Article

Metabolic route computation in organism communities

Microbiomes are complex aggregates of organisms, each of which has its own extensive metabolic network. A variety of metabolites are exchanged between the microbes. The challenge we address is understanding th...

Markus Krummenacker, Mario Latendresse, Peter D Karp in Microbiome (2019)

Article

Computing minimal nutrient sets from metabolic networks via linear constraint solving

As more complete genome sequences become available, bioinformatics challenges arise in how to exploit genome sequences to make phenotypic predictions. One type of phenotypic prediction is to determine sets of ...

Steven Eker, Markus Krummenacker, Alexander G Shearer, Ashish Tiwari… in BMC Bioinformatics (2013)

Article

Beyond the genome (BTG) is a (PGDB) pathway genome database: HumanCyc

Miles Trupp, Tomer Altman, Carol A Fulcher, Ron Caspi… in Genome Biology (2010)

Article

Computational prediction of human metabolic pathways from the complete human genome

We present a computational pathway analysis of the human genome that assigns enzymes encoded therein to predicted metabolic pathways. Pathway assignments place genes in their larger biological context, and are...

Pedro Romero, Jonathan Wagg, Michelle L Green, Dale Kaiser… in Genome Biology (2004)