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  1. Article

    Open Access

    Virtual pathway explorer (viPEr) and pathway enrichment analysis tool (PEANuT): creating and analyzing focus networks to identify cross-talk between molecules and pathways

    Interpreting large-scale studies from microarrays or next-generation sequencing for further experimental testing remains one of the major challenges in quantitative biology. Combining expression with physical ...

    Marius Garmhausen, Falko Hofmann, Viktor Senderov, Maria Thomas in BMC Genomics (2015)

  2. Article

    Open Access

    Targeted epigenome editing of an endogenous locus with chromatin modifiers is not stably maintained

    DNA methylation and histone 3 lysine 9 (H3K9) methylation are considered as epigenetic marks that can be inherited through cell divisions. To explore the functional consequences and stability of these modifica...

    Goran Kungulovski, Suneetha Nunna, Maria Thomas, Ulrich M Zanger in Epigenetics & Chromatin (2015)

  3. Article

    Open Access

    A novel reverse transduction adenoviral array for the functional analysis of shRNA libraries

    The identification of novel drug targets by assessing gene functions is most conveniently achieved by high-throughput loss-of-function RNA interference screening. There is a growing need to employ primary cell...

    Angelika Oehmig, Andrea Klotzbücher, Maria Thomas, Frank Weise in BMC Genomics (2008)