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Open AccessAccuracy of imputation to whole-genome sequence data in Holstein Friesian cattle
The use of whole-genome sequence data can lead to higher accuracy in genome-wide association studies and genomic predictions. However, to benefit from whole-genome sequence data, a large dataset of sequenced i...
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Open AccessGenome-wide distribution of genetic diversity and linkage disequilibrium in a mass-selected population of maritime pine
The accessibility of high-throughput genoty** technologies has contributed greatly to the development of genomic resources in non-model organisms. High-density genoty** arrays have only recently been devel...
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Open AccessNovel genomic approaches unravel genetic architecture of complex traits in apple
Understanding the genetic architecture of quantitative traits is important for develo** genome-based crop improvement methods. Genome-wide association study (GWAS) is a powerful technique for mining novel fu...
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Article
Open AccessMicrosatellite allele dose and configuration establishment (MADCE): an integrated approach for genetic studies in allopolyploids
Genetic studies in allopolyploid plants are challenging because of the presence of similar sub-genomes, which leads to multiple alleles and complex segregation ratios. In this study, we describe a novel method...
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Fruit size QTL analysis of an F1 population derived from a cross between a domesticated sweet cherry cultivar and a wild forest sweet cherry
Maximizing fruit size is critical for profitable sweet cherry (Prunus avium L.) production. Yet, despite its importance, little is known about the genetic control of fruit size. The objective of this study was to...
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Open AccessA Bayesian QTL linkage analysis of the common dataset from the 12thQTLMAS workshop
To compare the power of various QTL map** methodologies, a dataset was simulated within the framework of 12th QTLMAS workshop. A total of 5865 diploid individuals was simulated, spanning seven generations, with...
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Breeding value estimation with incomplete marker data